Query= MSMg01no372_n14.b1 MSMg01no372_n14.b1 CHROMAT_FILE:
MSMg01no372_n14.b1 PHD_FILE: MSMg01no372_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:41 2005
(479 letters)
>mm_chr1_134954687_134955566
Length = 880
Score = 882 bits (456), Expect = 0.0
Identities = 474/480 (98%), Gaps = 1/480 (0%)
Strand = Plus / Plus
Query: 1 agtggaccagagcaatttccagtgtgtctgcccagcagaggctggtaggggagaaactcc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 agtggaccagagcaatttccagtgtgtctgcccagcagaggctggtagggaagaaactcc 260
Query: 61 actggacataggagactcagggaacatgaggctctagttactagaatagttggtcccact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actggacataggagactcagggaacatgaggctctagttactagaatagttggtcccact 320
Query: 121 atttcagtatgacctgatcttcccttttcctctctgagccttgcttccccttggaggtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttcagtatgacctgatcttcccttttcctctctgagccttgcttccccttggaggtgg 380
Query: 181 cagggatgctgtctctgggcttcca-tggctgacagcctagtgatacctttgccaacagc 239
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 cagggatgctatctctgggcttccaatggctgacagcctagtgatacctttgccaacagc 440
Query: 240 cagaaccacaagtagagggccctttgtatagtctttttgttcatctgtgcatttccctgc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaaccacaagtagagggccctttgtatagtctttttgttcatctgtgcatttccctgc 500
Query: 300 cctattagtgcctagtccaaccccattctgtgttggaaagaccctattcaaggataccat 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctatcagtgcctagtccaaccccattctgtgttggaaagaccctattcaaggataccat 560
Query: 360 ctgtgtactggtcacctatcaccgtgtctataaaatcctcactactagacacgtctgtcc 419
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 ctgtgtaccggtcacctatcaccgtgtctataaaatcctcactactagccacgtctgtcc 620
Query: 420 ttatattctgatccacagccattctctgcagaagtatgttaatttagagattgaggttag 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttatattctgatccacagccattctctgcagaagtatgttaatttagagattgaggttag 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 880
Length adjustment: 10
Effective length of query: 469
Effective length of database: 870
Effective search space: 408030
Effective search space used: 408030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_n14.g1 MSMg01no372_n14.g1 CHROMAT_FILE:
MSMg01no372_n14.g1 PHD_FILE: MSMg01no372_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:41 2005
(531 letters)
>mm_chr1_135116337_135117267
Length = 931
Score = 942 bits (487), Expect = 0.0
Identities = 521/539 (96%), Gaps = 12/539 (2%)
Strand = Plus / Minus
Query: 5 cagccgttcagaccccagaagtccctaccatgctgaagtggccacacctcacccatttat 64
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 931 cagctgttcagaccccagaagtccctaccatgctgaagtggccacacctcagccatttat 872
Query: 65 tccatgggcgcgtcctaagcagccacggtgaggcatctccatccttgacatggatacaga 124
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 tccatgggcatgtcctaagcagccacggtgaggcatctccatccttgacatggatacaga 812
Query: 125 caaaagaaatgaaggaaacatcctctcactgggggcaatagtgacagctagaggggtggg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 caaaagaaatgaaggaaacatcctctcactgggggcaatagtgacagctagaggggtggg 752
Query: 185 gccaaga-------a-----acatcgtggaagcagtgaagaggcacaagcacattgcagg 232
||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gccaagaggtgctcaggtgtacatcgtggaagcagtgaagaggcacaagcacattgcagg 692
Query: 233 gtaggggtaacagagggtgacagagggcaataggcatggacactgcactctgctggacat 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gtaggggtaacagagggtgacagagggcaataggcatggacactgcactctgctggacat 632
Query: 293 gctccacagttaggaccaccgtcaatccccacacaggagcgctgggaaggcactgggagg 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gctccacagttaggaccaccgtcaatccccacacaggagcgctgggaaggcactgggagg 572
Query: 353 ccactgtgggtcccacagtgtagatgacatacaaaatgccttctgctcagtgctagtgtc 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 571 ccactgtgggtcccacagtgtagatgacatacaaaatgccttctgctcagtgctagcgtc 512
Query: 413 tcatgcatcagtagacctccgctgccggtgtgctccctccccacaggaagaattggctcc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tcatgcatcagtagacctccgctgccggtgtgctccctccccacaggaagaattggctcc 452
Query: 473 atcaagggcagctagagcgctgagatattttcctaacttctaaaactcatggacagagg 531
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 atcaagggcagctaaagcgctgagatattttcctaacttctaaaactcatggacagagg 393
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
