BAC Information

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BAC

Clone NameMSMg01-373A21
Chromosome1 (Build37)
Map Location 69,974,476 - 70,113,547
singlet/doubletdoublet
Overlap geneSpag16
Upstream geneErbb4, LOC667842, EG241084, Ikzf2
Downstream geneA830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373A21.T7 (MSMg01no373_a21.b1)MSMg01-373A21.TJ (MSMg01no373_a21.g1)
ACCAG479174AG479175
length730721
length of high quality
(start - end)		476 (20 - 495)497 (58 - 554)
definitionCHROMAT_FILE: MSMg01no373_a21.b1 PHD_FILE: MSMg01no373_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:56 2005CHROMAT_FILE: MSMg01no373_a21.g1 PHD_FILE: MSMg01no373_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,974,476 - 69,974,946)(70,113,051 - 70,113,547)
sequence
ACTCCTATATTCAGAGGATCCGCGGAATTCTCCATTATTTTGTACAAAAG
ACACACACACAACACACATACACAATTTTTCTTTGCTTACAATTATGTTG
AAATTTAACAAACCCTTTCAGAGCATAAATTACTATGTATCAGTAACTAA
AAATTCTTATTTAACCTGCGCATACAGTATGCTTAAAATGATGGTACTAT
TGAACCAAGGGGAAGCAATTCCTGAAGAAATAACTAATGCTGAGAGCAGG
CCAGAGTGTACACGGGATGAGCTTGTGACATGCGACGGGAAGAATTTTCC
TATGTTCTCACAAGTATGTATTGTTATTAACCATAGGATAGATGAAAATA
TTTGCTATTTCTTTATTGACAAGTGAATTGAGACTCCTCAACATATTATA
TACTATTTGGAGACCATAGCTTTTTGTTTGTTTATGGGGGGATATATACT
CTGTCTCTTCAGGAAGTAAGGAAAAAATTAATTCTCTCATTCCACCATGT
GGACCCTTGGGGTTAAACTTAGATCTTAGGTTTGGCAGAGAGTACCCTTA
CTTAATTGCTGAACGATTTCATTGGNCAAGTTCTCCACTCATTCACTCAT
TTGCATCAATCATTCATTCAAAGTCCTGACTGCAATTTCCCCTCCTTCAG
NTCTCTACTGGTGAAGAATTAAAAATTGTATACCCGAATGCGCATCCTTA
CACAGGGTACCCCACCTGTTGCTTTTATTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTAAATTTAAAGTTTTATGTCTAAGAAAGATGTATATTCATTTC
TTTATACATTCACCAAATAGGAATGTGGATATATGGTATAGCTTAGAAAA
GCCACTGTTATGTACACTAGAACAGGTGATGAGATTAAATTAAATTAAAT
TTGGGGGAAAAGGGGAAGAGAGGTTATACTGTTTCAAAAGAAGTCCCTTG
TAGTCTTTTGAGTATTGTTTCTTGTCATGAGCAAGAGCCATAACCCAAAC
CAGAGCTGACAATTCTGTCACTTGCAAAACTGGTTTTTCCAGGTTACCTT
TTGCAAATATAAATGTTTACAACTTATTGATCTGACAGAAATTTTACTTT
ACCTCTCCAAGAGCAGAAGCTCTGTCATAATTCAGAAGGAACAAAACCAA
GAAAACTTTGAAATGAATTATGGGAATGAAATCAATGTGTACTGGAGAAA
TAAAGTCATTTTGATTGTCTATAAACATCTTAATACTCTGAAATTCCTTT
GTTCATTATTTATACAATTAAAAAATTCCAAAATTTTAAGACCGTATTTA
ATCTTTCCAGACCAGAAGTAAAAAAAGGATTGCCTGTTAACCCCTTTTCC
TTCCCCAAATCATACCCGTTATTTGGACTCCCTATTGGCAAAATTCTGGG
ATTTTTAACTATCAACCCCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_a21.b1 MSMg01no373_a21.b1 CHROMAT_FILE:
MSMg01no373_a21.b1 PHD_FILE: MSMg01no373_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:56 2005
         (476 letters)



>mm_chr1_69974271_69975146
          Length = 876

 Score =  864 bits (447), Expect = 0.0
 Identities = 465/471 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctccattattttgtacaaaagacacacacacaacacacatacacaatttttcttt 65
           |||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 206 gaattctctatcattttgtacaaaagacacacacacaacacacatacacaatttttctct 265

                                                                       
Query: 66  gcttacaattatgttgaaatttaacaaaccctttcagagcataaattactatgtatcagt 125
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gcttgcaattatgttgaaatttaacaaaccctttcagagcataaattactatgtatcagt 325

                                                                       
Query: 126 aactaaaaattcttatttaacctgcgcatacagtatgcttaaaatgatggtactattgaa 185
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 326 aactaaaaattcttatttaacctgcgcatacagtgtgcttaaaatgatggtactattgaa 385

                                                                       
Query: 186 ccaaggggaagcaattcctgaagaaataactaatgctgagagcaggccagagtgtacacg 245
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccaaggggaagcgattcctgaagaaataactaatgctgagagcaggccagagtgtacacg 445

                                                                       
Query: 246 ggatgagcttgtgacatgcgacgggaagaattttcctatgttctcacaagtatgtattgt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggatgagcttgtgacatgcgacgggaagaattttcctatgttctcacaagtatgtattgt 505

                                                                       
Query: 306 tattaaccataggatagatgaaaatatttgctatttctttattgacaagtgaattgagac 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tattaaccataggatagatgaaaatatttgctatttctttattgacaagtgaattgagac 565

                                                                       
Query: 366 tcctcaacatattatatactatttggagaccatagctttttgtttgtttatggggggata 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tcctcaacatattatatactatttggagaccatagctttttgtttgtttatggggggata 625

                                                              
Query: 426 tatactctgtctcttcaggaagtaaggaaaaaattaattctctcattccac 476
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tatactctgtctcttcaggaagtaaggaaaaaattaattctctcattccac 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no373_a21.g1 MSMg01no373_a21.g1 CHROMAT_FILE:
MSMg01no373_a21.g1 PHD_FILE: MSMg01no373_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:56 2005
         (497 letters)



>mm_chr1_70112851_70113747
          Length = 897

 Score =  915 bits (473), Expect = 0.0
 Identities = 491/497 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaatttaaagttttatgtctaagaaagatgtatattcatttctttatacattcaccaaa 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 697 taaatttaaagttttatgtctaagtaagatgtatattcatttctttatacattcaccaaa 638

                                                                       
Query: 61  taggaatgtggatatatggtatagcttagaaaagccactgttatgtacactagaacaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 637 taggaatgtggatatatggtatagcttagaaaagccactgttatgtacactggaacaggt 578

                                                                       
Query: 121 gatgagattaaattaaattaaatttgggggaaaaggggaagagaggttatactgtttcaa 180
           |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 577 gatgagattaaattaaattaaatttggggggaaagcggaagagaggttatactgtttcaa 518

                                                                       
Query: 181 aagaagtcccttgtagtcttttgagtattgtttcttgtcatgagcaagagccataaccca 240
           ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 517 aagcagtcccttgtagtcttttgagtgttgtttcttgtcatgagcaagagccataaccca 458

                                                                       
Query: 241 aaccagagctgacaattctgtcacttgcaaaactggtttttccaggttaccttttgcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aaccagagctgacaattctgtcacttgcaaaactggtttttccaggttaccttttgcaaa 398

                                                                       
Query: 301 tataaatgtttacaacttattgatctgacagaaattttactttacctctccaagagcaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tataaatgtttacaacttattgatctgacagaaattttactttacctctccaagagcaga 338

                                                                       
Query: 361 agctctgtcataattcagaaggaacaaaaccaagaaaactttgaaatgaattatgggaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agctctgtcataattcagaaggaacaaaaccaagaaaactttgaaatgaattatgggaat 278

                                                                       
Query: 421 gaaatcaatgtgtactggagaaataaagtcattttgattgtctataaacatcttaatact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gaaatcaatgtgtactggagaaataaagtcattttgattgtctataaacatcttaatact 218

                            
Query: 481 ctgaaattcctttgttc 497
           |||||||||||||||||
Sbjct: 217 ctgaaattcctttgttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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