Query= MSMg01no373_b12.b1 MSMg01no373_b12.b1 CHROMAT_FILE:
MSMg01no373_b12.b1 PHD_FILE: MSMg01no373_b12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:59 2005
(510 letters)
>mm_chr1_101937764_101938673
Length = 910
Score = 907 bits (469), Expect = 0.0
Identities = 496/505 (98%)
Strand = Plus / Minus
Query: 6 ggaattctgtatgtcttacacttaataggaaacaaacttctgacaaggttgaacacaata 65
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ggaattctgtatgtcataaacttaataggaaacaaacttctgacaaggttgaacacaata 651
Query: 66 tagatttattataactgaattgaatttaatgacagtagtaaaaatcatattgagacagaa 125
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 650 tagatttattataactgaattgaatttaatgacagtagtaaaaatcatattgagacagga 591
Query: 126 tagaaatgaaaaccttaggtagctttagcaaagaggcttatggctagaaccagaataaga 185
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 590 tagaaatgaaaaccttagatagctttagcaaagaggcatatggctagaaccagaataaga 531
Query: 186 gaactggaagcagtggcatgaaattgtaacaacacatgagtttgtccaggcatatttaag 245
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 530 gaactggaagcagtggcatgaaattgtaacaacacatgagtttgtccaggcagatttaag 471
Query: 246 cctatgatataaactgaggccatgagaacaggccaaggggctgtgtgagcatggagaagt 305
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 470 cctatgatataaactgaggccatgagaacaggccaagggactgtgtgagcatggagaagt 411
Query: 306 aagcgtctgggcacttttcatttaccagactgctggcagtatgcgtgaagaacatttaaa 365
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 410 aagcgtctgggcacttttcatttaccagactgctggcagtatgtgtgaagaacatttaaa 351
Query: 366 atatatatctgaataatataattgaataatttagcatccttgggtgaagtgggattgtgg 425
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 350 atatatatctgaataatataattgaataatttagcatccttgggtgaattgggattgtgg 291
Query: 426 gggtgggcgtggatgtcactgagcctttcgtgctggtgtcctgagaaaagagctcggcag 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gggtgggcgtggatgtcactgagcctttcgtgctggtgtcctgagaaaagagctcggcag 231
Query: 486 cagtcagtaatgccaaatgagaaat 510
|||||||||||||||||||||||||
Sbjct: 230 cagtcagtaatgccaaatgagaaat 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_b12.g1 MSMg01no373_b12.g1 CHROMAT_FILE:
MSMg01no373_b12.g1 PHD_FILE: MSMg01no373_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:59 2005
(535 letters)
>mm_chr1_101782810_101783745
Length = 936
Score = 940 bits (486), Expect = 0.0
Identities = 522/534 (97%), Gaps = 1/534 (0%)
Strand = Plus / Plus
Query: 3 tgtttagctctgagccccatttttaatggggttatttgattttctggagaccaccctctt 62
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 203 tgtttaactctgagccccatttttaatggggttatttgattttctggagtccaccctctt 262
Query: 63 gagttctttatatatattggatattagtcccgtatctgatttaagataggtaaagatcct 122
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 263 gagttctttatatatattggatattagtcccctatctgatttaagataggtaaagatcct 322
Query: 123 ttcccaatctgttggtggcctttttgtcttattgtcggtgtctttttattcttgatatat 182
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 323 ttcccaatctgttggtggcctttttgtcttattgacggtgtcttttcattcttgatatat 382
Query: 183 ttaatttactagggatacaattggaatgatcatactaatgatagcctagccaatacttcc 242
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 383 ttaatttactagggatacaattggaatgatcatactaatgatagcctagtcaatacttcc 442
Query: 243 gctggtaataaagacatagccaaaatgtgtacaggtctttgcctccccactagaagcttg 302
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 443 gctggcaataaagacatagccaaaatgtgtacaggtctttgcctccccactagcagcttg 502
Query: 303 aagaatttccttcccctcacagaccttcaatcagaccttcagtgaaggagagatttttt- 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aagaatttccttcccctcacagaccttcaatcagaccttcagtgaaggagagattttttt 562
Query: 362 aaatatatttttattagatattttcttcatttatatttcaaatgctatccccaaagaccc 421
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aaatatatttttattcgatattttcttcatttatatttcaaatgctatccccaaagaccc 622
Query: 422 ctatacactccccacaccctactccccaacacactcactcctgcttcctggccttggcat 481
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 623 ctatacactccccacaccctactccccaacacactcactcctgtttcctggccttggcat 682
Query: 482 tcccctgtactggggtatatgatctttgcaagacaaagggtctctcctcccatt 535
|||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 683 tcccctgtactggggtatatgatcttcgcaagacaaagggtctctcctcccatt 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 936
Length adjustment: 10
Effective length of query: 525
Effective length of database: 926
Effective search space: 486150
Effective search space used: 486150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
