BAC Information

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BAC

Clone NameMSMg01-373C13
Chromosome1 (Build37)
Map Location 42,049,709 - 42,050,358
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041441
Downstream geneLOC383634, LOC666582, 2610017I09Rik, Pou3f3, Mrps9, Gpr45
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373C13.T7 (MSMg01no373_c13.b1)MSMg01-373C13.TJ (MSMg01no373_c13.g1)
ACCAG479254AG479255
length709703
length of high quality
(start - end)		681 (15 - 695)69 (356 - 424)
definitionCHROMAT_FILE: MSMg01no373_c13.b1 PHD_FILE: MSMg01no373_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:04 2005CHROMAT_FILE: MSMg01no373_c13.g1 PHD_FILE: MSMg01no373_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACTATATCGAGAGGATCCGCGGAATTCATTGCCATCTGATCAAAAAG
AGGATAGAAGCTTAATTACTTATATTAAAACTGTAAAAGCCCAGCTGGCT
AGTTAGTCCCGAGAATTTGCTTAGCTTGTTGTCATCTAATAAGTCCCTGT
GACTGGAGAGGGCACTATGTTTCGAATATGAGAGTCTGACTAACTCGAGG
TTTTGTTTATTTTTTTCCCCGTGACAGGTTTTCTCTGTCCTGAAACTGTC
CTGAAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCT
GCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTACGCCACCACACCTGT
TTATATAACATTTGCTATGTTTGCCTATCAGAGAAAGAATGTATACAGAT
ATATGATGGACATACAACCTGTACTCAAGCTATAGTTATGATTTCTCTCA
AGAGTTGAGTATATGGACCCAATTTTGCAGTTCTCAGAGTTTAGCATGAG
TCAGTCTTTCCCTGGGAAGTTGATAAGCTAAAGGGCTAGACCTATTCTTG
GGGGTTCTTGCCCATCAATTCTGAAGAATAATGAAGGTATGTGTATTAGT
CAGGATTTCTATTCCTGCACAAATATCATGACCAAGAAGCAAGTTGGGGA
GGAAAGGGTTTATTCAGCTTACACTTCCACATTGCTGTTGATCACCAAAA
GAAGTCAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXATAGATAAATAGATAATTGTAATATGCTATTAAAGTATGAAAAA
TTGACCTACTGTAAGATTTTTGTCAGTAGGGTATCATGGATGGGCCTGAG
TATATTATGTTAAGGAAAAATCCTGGCCACAGAAAAACAGACTTTCAAAA
GGATAATTTTAAAATGTTAATGTCAATAGAAGTATTGTTAAGTATAAAGA
GTTAACAAAATAGGAGCACAGACCACTCAATGTGTATGTTGTGCCCTGCT
TTTTTATTATACTACATTCTTAAGTAATGAGAAGAATATAATCAATAAAG
TTGAATTAATTGTTTCAAAAGTTAAAAGGAATTTGTGTACAGTCACCATA
AATGATAAAAACAGGATGGGGTACGGTGTGCTTATTCCCAATTATTGGGA
AACTGAGGCTGGAAAAAACATCCCACTTCCAAGCCAGTCGAAACATCTTC
ATGAGAACCTTAGTGAAATAATAATTGAACACAGTACTAAAAACCTAAGG
TATGGTTCAGCTGACGGAAACTTGCTTAGTCCTTTAGTCTACTGGGGTAA
TATTAGCTGCCTCCTTTCATGTGACTTCTCCCTCTTTTTTTTTTTTTTGA
GTGATGATTTCTTCAAATCTGACCCCCATCTTATGTTCTATTTGATCCAA
ATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_c13.b1 MSMg01no373_c13.b1 CHROMAT_FILE:
MSMg01no373_c13.b1 PHD_FILE: MSMg01no373_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:04 2005
         (681 letters)



>mm_chr1_42049278_42050358
          Length = 1081

 Score = 1234 bits (638), Expect = 0.0
 Identities = 647/650 (99%)
 Strand = Plus / Minus

                                                                        
Query: 32   aaaagaggatagaagcttaattacttatattaaaactgtaaaagcccagctggctagtta 91
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 aaaagaggatagaagcttaattacttatattaaaactgtaaaagcccagctggctagtta 1022

                                                                        
Query: 92   gtcccgagaatttgcttagcttgttgtcatctaataagtccctgtgactggagagggcac 151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 gtcccgagaatttgcttagcttgttgtcatctaataagtccctgtgactggagagggcac 962

                                                                        
Query: 152  tatgtttcgaatatgagagtctgactaactcgaggttttgtttatttttttccccgtgac 211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  tatgtttcgaatatgagagtctgactaactcgaggttttgtttatttttttccccgtgac 902

                                                                        
Query: 212  aggttttctctgtcctgaaactgtcctgaaactcactttgtagaccaggctggccttgaa 271
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 901  aggttttctctgtcctgaaactgtcctgaaactcactttgtagaccaggctggcctcgaa 842

                                                                        
Query: 272  ctcagaaatccacctgcctctgcctcccaagtgctgggattaaaggtgtacgccaccaca 331
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 841  ctcagaaatccacctgcctctgtctcccaagtgctgggattaaaggtgtacgccaccaca 782

                                                                        
Query: 332  cctgtttatataacatttgctatgtttgcctatcagagaaagaatgtatacagatatatg 391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  cctgtttatataacatttgctatgtttgcctatcagagaaagaatgtatacagatatatg 722

                                                                        
Query: 392  atggacatacaacctgtactcaagctatagttatgatttctctcaagagttgagtatatg 451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  atggacatacaacctgtactcaagctatagttatgatttctctcaagagttgagtatatg 662

                                                                        
Query: 452  gacccaattttgcagttctcagagtttagcatgagtcagtctttccctgggaagttgata 511
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  gacccaattttgcagttctcagagtttagcatgagtcagtctttccctgggaagttgata 602

                                                                        
Query: 512  agctaaagggctagacctattcttgggggttcttgcccatcaattctgaagaataatgaa 571
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  agctaaagggctagacctattcttgggggttcttgcccatcaattctgaagaataatgaa 542

                                                                        
Query: 572  ggtatgtgtattagtcaggatttctattcctgcacaaatatcatgaccaagaagcaagtt 631
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  ggtatgtgtattagtcaggatttctattcctgcacaaatatcatgaccaagaagcaagtt 482

                                                              
Query: 632  ggggaggaaagggtttattcagcttacacttccacattgctgttgatcac 681
            |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 481  ggggaggaaagggtttattcagcttacacttccacactgctgttgatcac 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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