CCTATTTGCAGAGGATCCGCGGAATTCTATGTTCTTACCAAAACATATCC
TAATTTTTGCTCTCCTTTTTATTTCCTAGACAGGGTTTTATTATGTAGAC
CAAGCTAGTCTCAAACTCAGAGATCTGCCTACATCTGCCCTCCCAAGTAC
TGGAATTTAAAGTGTGTATCACAATACTGGCTGCCCTTGTTTCTTAATAC
AACAGAGCTGAAATTATTTCCTCTATCTTATCAGATCACATCTGCAGTGG
TCAAAATAGGGAGTCAAATCCTATGTAACTGGAATTACAAGTAGTTGCAA
GCTACTTGACATGAGTGCTGGGAACCAAACTCAGGCCTCTGTTAAAGCTG
TCCATGTTCTTAGTTGCACAGTCATCTTTCAGCCCTGTGACTTAGCTTTT
GAATGAGACTTCTAATTCTATTGTTGTCAGGAAGCTGTGTGGCTGCAGCT
TATTTTTAAAATGCCAACCAAAGAAAGCACCAAAAGTGCATCTCACATGC
AAACTGTGTTAGACTCTGATACCCTGCTAATGTGNCTATGCATCCTTTAA
GGGTATGATAANGAATCACTACTGGGCTAGGTGGGGGTTGGTGACACTTT
GTAGCTTGGGAAAAAATCTGGATTCTGTTTCACCCCTTACCCGTTAAGTA
ACTGAATTAATTACCCGATGGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCAGCTCCTCCTGCACCATGCCTGCCTGGATGTTCCCATGCTCTC
ATCTTGATAATGGACTGAACCTCTGAACCTGTAAGCCAGCTCCAATACAA
TGTTGTCCTTCTAAGAGTTGCCTTGGTCATGGTGTCTGTTCACAGCAATA
AAACCCTAACTAAAACAGAAGTTGGTACCAGGAGTGGGGTATTGCTATGA
TAGGCCTGACGGTGCTTTTGTTTGGAAGAATGTAGATTTGGGGGTTTTGT
GTTTGTTTAGCAGNGGATATCTTTAAGTGGGGCTTAATTGGTTATTCTAC
CACGAATATTAAAAAAAAAAAAACTTTGTAACTGAGAGTGATTTGAACTG
TACAGACCTGGCCCAAGAGGATTTCAATATGTGGCCTAAAGATTGTTTTT
GCGCGATTTTGGCGAACAACGAGGTTGATTTTTGCCCTTGTCTGAAAAGT
CTACCTGAGGTCAACGTTATCTTATTTATATTAATTACTCCCACTCATGA
CATTCCCAATATTCCTACTCTAAACCTTTGTTCTTTATTCATTATTGAAT
AATTTTCTGAATACAACTTGATCAGCTTTAAAATGGATAACTCATTTTTT
TTTTTTTTTCATCCCTTTTGTAACTAAACCCTTGTTGAATCCCTATTTTT
AAACTCACCTCACT

Query= MSMg01no373_c20.b1 MSMg01no373_c20.b1 CHROMAT_FILE:
MSMg01no373_c20.b1 PHD_FILE: MSMg01no373_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:05 2005
         (452 letters)



>mm_chr1_6077644_6078497
          Length = 854

 Score =  814 bits (421), Expect = 0.0
 Identities = 446/455 (98%), Gaps = 4/455 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatttttgctctcctttttatttcctagacagggttttattatgtagaccaagctagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatttttgctctcctttttatttcctagacagggttttattatgtagaccaagctagtc 260

                                                                       
Query: 61  tcaaactcagagatctgcctacatctgccctcccaagtactggaatttaaagtgtgtatc 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct: 261 tcaaactcagagatctgcctacatctgccctcccaaggactggaatttaaagtgtgtatt 320

                                                                       
Query: 121 acaatactggctgcccttgtttcttaatacaacagagctgaaattatttcctctatctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaatactggctgcccttgtttcttaatacaacagagctgaaattatttcctctatctta 380

                                                                       
Query: 181 tcagatcacatctgcagtggtcaaaatagggagtcaaatcctatgtaactggaattacaa 240
           |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagatcatatctgcggtggtcaaaatagggagtcaaatcctatgtaactggaattacaa 440

                                                                       
Query: 241 gtagttgcaagctacttgacatgagtgctgggaaccaaactcaggcctctgttaaagctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagttgcaagctacttgacatgagtgctgggaaccaaactcaggcctctgttaaagctg 500

                                                                       
Query: 301 tccatgttcttagttgcacagtcatctttcagccctgtgacttagcttttgaatgagact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccatgttcttagttgcacagtcatctttcagccctgtgacttagcttttgaatgagact 560

                                                                       
Query: 361 tctaattctattgttgtcaggaagctgtgtggctgcagcttattt-ttaaaatgccaacc 419
           |||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||
Sbjct: 561 tctaattctattgttgtcaggaagctgtgtggctacagcttatttcttaaaa-gccaacc 619

                                              
Query: 420 aaagaaagcaccaaaagt--gcatctcacatgcaa 452
           ||||||||||||||||||  |||||||||||||||
Sbjct: 620 aaagaaagcaccaaaagtatgcatctcacatgcaa 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 854
Length adjustment: 10
Effective length of query: 442
Effective length of database: 844
Effective search space:   373048
Effective search space used:   373048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)