BAC Information

Click to search

BAC

Clone NameMSMg01-373C21
Chromosome1 (Build37)
Map Location 159,949,225 - 159,949,756
singlet/doubletsinglet
Overlap genenone
Upstream gene1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
Downstream gene6430517E21Rik, Astn1, Pappa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373C21.T7 (MSMg01no373_c21.b1)MSMg01-373C21.TJ (MSMg01no373_c21.g1)
ACCAG479270AG479271
length739769
length of high quality
(start - end)		533 (18 - 550)43 (74 - 116)
definitionCHROMAT_FILE: MSMg01no373_c21.b1 PHD_FILE: MSMg01no373_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:05 2005CHROMAT_FILE: MSMg01no373_c21.g1 PHD_FILE: MSMg01no373_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATAGTCAGAGGATCCGCGGAATTCTACGGACTTATTTTTAAACCT
TGTCTTTCTTAATCATTGACACCATATTGGCTTCTTTGGCAATCTCATCT
ATATTGTGACTTTATTTACCACCTTTTTGCAGTTTCCCCTCACATTTCTA
TCTGACATGGACCTCCTATGATTTGCTGAAATAAATCTGACAATTCCTCT
TGGGCACCATAAATAAACATCAGCCCAGCCTTTCCATTACCCAGTATGGC
CCTCACTATGCTCTCTTCCAGGGAAAAGCGCTACCATGGACAGCGATCTA
AACGCAGACTCCTTAGCATTCTCTCCCCGTTCCTGTGCCTAATGTTCATC
CAACTGCAACTCCGGCCGGCTGACAAACTTTTTGACTATATCTTATTTTC
TTCATCTCCCTGTTTGTCATGCTAGTATAAAACATTATCATGTCCCCTTC
CAAAATCCTCTTAACTCGTCTTGCTCCCCTCCTGCCCCCTGCCATTCACC
ATCACCCTTCTTTCTCTGATCCATTTTACTCCCCAACACCTGAAGCAATC
ATAAGAAGCAAAAATGGTAATCTTGTTATTGTCACCCACTTACAACTTCT
CTCTTTTTTATTATCGNTTTCTACATCCTGGGNGGCAGTTTCCTTCCCTC
CTCCTCTCCTAAACCCTCCCCTAAATATCCCTTCTTACTATATATGCCCC
ATCCCACCCACCTAATCTTCCCCATTTTTCTTCATAAAA

TGAAGCGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTCACAGTTGAAAGGACAACTTTCTGCTTCA
TATGAAAAAAACAAAAACCCACCGAGAGATAACAAAATCCTCGAATAGTA
AAAGAACTTCTCGGAGGTCTTCTCATTCTTCATTTCAAACTGTACTATAC
AGCTATAGTAATACAAACAGCACGGTATTGACATAAAAACAGACATGATG
ACCAGTGCAACGGAATTGGAGACCCAGACATAAAACTACCCACCTATGAA
CACCTAGTTATTGATACAGAATTCTTTTTTTACATACCCGAACACAGACA
GCCTTTTCCACCACTGACGCTGACCCTATCGGAGATCAGCCCTACCACCA
ATGCCCCTACACCCTCACTTATTACCCCGCACCACGCCCCAGTTCCCCAC
GGCTCAAACCCCCCCCCCCCCCACCCCAACACCCCGAACTCCACCCCCAC
ACAACACCGCCCCCTCCCCCCTCCCCCCCCCCCCCCCCCCCACCACCACC
CTCCGCCCTCCCACCCCCCCCTCCCCCCCCCCCCCTCTCCCCCCCCCCTC
CCCCCCCCCCCCCCCCCCCTCCCACCCCTCCCCCCCCCCCTCCCCCCCCC
CCCCGCCCCCCCCCCTCTCCCCCCCCCCCCCCCCTCCCCCCCCCTTCCCC
CCCCCCCCTTCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCACCTCCCCT
CCCCCCCCCCCCCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_c21.b1 MSMg01no373_c21.b1 CHROMAT_FILE:
MSMg01no373_c21.b1 PHD_FILE: MSMg01no373_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:05 2005
         (533 letters)



>mm_chr1_159949020_159949956
          Length = 937

 Score =  971 bits (502), Expect = 0.0
 Identities = 523/532 (98%), Gaps = 4/532 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattctacggacttatttttaaaccttgtctttcttaatcattgacaccatattggct 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ggaattctacggacttatttttaaaccttgtctttcttaatcattgacaccatattggct 678

                                                                       
Query: 66  tctttggcaatctcatctatattgtgactttatttaccacctttttgcagtttcccctca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tctttggcaatctcatctatattgtgactttatttaccacctttttgcagtttcccctca 618

                                                                       
Query: 126 catttctatctgacatggacctcctatgatttgctgaaataaatctgacaattcctcttg 185
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 catttctatctgacacggacctcctatgatttgctgaaataaatctgacaattcctcttg 558

                                                                       
Query: 186 ggcaccataaataaacatcagcccagcctttccattacccagtatggccctcactatgct 245
           ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 557 ggcaccataaataaacatcagcccagcctttgcactacccagtatggccctcactatgct 498

                                                                       
Query: 246 ctcttccagggaaaagcgctaccatggacagcgatctaaacgcagactccttagcattct 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctcttccagggaaaagcgctaccatggacagcgatctaaacgcagactccttagcattct 438

                                                                       
Query: 306 ctccccgttcctgtgcctaatgttcatccaactgcaactccggccggctgacaaactttt 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctccccgttcctgtgcctaatgttcatccaactgcaactccggccggctgacaaactttt 378

                                                                       
Query: 366 tgactatatcttattttcttcatctccctgtttgtcatgctagtataaaacattatcatg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgactatatcttattttcttcatctccctgtttgtcatgctagtataaaacattatcatg 318

                                                                       
Query: 426 tccccttccaaaatcctcttaactcgtcttgctcccctcctgccccct----gccattca 481
           |||||||||||||||||||||||| ||||||||||||||||||||||     ||||||||
Sbjct: 317 tccccttccaaaatcctcttaacttgtcttgctcccctcctgccccccccccgccattca 258

                                                               
Query: 482 ccatcacccttctttctctgatccattttactccccaacacctgaagcaatc 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ccatcacccttctttctctgatccattttactccccaacacctgaagcaatc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 937
Length adjustment: 10
Effective length of query: 523
Effective length of database: 927
Effective search space:   484821
Effective search space used:   484821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |