BAC Information

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BAC

Clone NameMSMg01-373F13
Chromosome1 (Build37)
Map Location 119,434,929 - 119,435,443
singlet/doubletsinglet
Overlap genenone
Upstream geneCntnap5a
Downstream geneB020011L13Rik, LOC100041684, LOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip, Clasp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373F13.T7 (MSMg01no373_f13.b1)MSMg01-373F13.TJ (MSMg01no373_f13.g1)
ACCAG479398AG479399
length719720
length of high quality
(start - end)
624 (19 - 642)515 (58 - 572)
definitionCHROMAT_FILE: MSMg01no373_f13.b1 PHD_FILE: MSMg01no373_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:17 2005CHROMAT_FILE: MSMg01no373_f13.g1 PHD_FILE: MSMg01no373_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCCTATTTCGAGAGGATCCGCGGAATTCTTTGTTTAGCTCTGAGCCCC
ATTTTTTTAATGGGGTTATTTGATTTTTCTGGAGTCCACCTTCTTGAGTT
CTTTAAATATATTGATATTAGTCCTCTGTCTGATTTAGGTTAGGTAAAGA
TCTTTCCCAATCTGTTGGTGGCCTCTTTGTCTTATTGACGGTGTTTATTG
CTTTACAGAAGCTTTCAGTTTCATGAAGTCCCATTTGTCACTTCTCGATC
TTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTGTTCTCCTGTGCCC
AAATCTTCGAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTA
TAAGTATTACTGTCTCTGGTTTTATGTGGAGCTCCTTGATCCACATAAAT
TTGACCTTAGTACAAGGAGATAGGAAAGGATCAATTTGCATTCTTCTACA
TGATAACCACCAGTTGGGGCACCCACATTCTTAAAAGAAACTCAAAACAC
ATATCACACCCCACACAATAATATTGGGTGACCTCAACACCCAACTCTCA
GCAATGGACTGATCATGGAAAGAGAAACTAAATAGAGACACAGTGAAACT
TGCAGCAGTTATGAACCAAATGGTTTTAACAGATATGTATAGAATATTGC
ATCCTCAAGCAAAGATTATTCCTTCTTCTCAGNACTTCCTAGTAGCATCT
CCCAACTGANCATATTTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACTGGGTAGCTGAGGATGGCTTTGTATTTCTGATCCCTCTGAC
TGTTGGAAATGTAGGTATACACCACTGCTGTTAAATAGTCTGTGCTTATT
CATTATGCCTAAATTTTCTGTATATGAGGCAGGCATACATTTACAGACTT
CCCACTGATTTATTATAAATTTGATTATTCTCAAAGATGCATGTTTAACG
CTAGTTGTAATGGGTCTGCATGGGCTACTTTGCTCTTAGCACAAGGAGTT
GTCTCCAGTTTCACTTCCTGCAGGTTCTCTTTGTCTGATTTGTTGAGGTT
TCCCTGGAATCAGCACCAAGTAGGGACCAATGTTGAATATCAATGAGTCT
CAAGAGCATTAAGCCTTAGGAATACTCATATTCACATAAACAATTTTATG
AGAAATATGCTTAAGCTAAAAATATCTCTTAAAGTCCTGTAGCTCCCTCT
TCCAGCACTGTTTCAGTCCAAGCTCTAGAAATATAATTTAACTGGACTCA
TAGATTCCAATCCATTGTTAGTTTGGGTAGAATTTCTGTCATTATAAATT
ATATTTTTCATCCAAATATTCTCCCATCAACCAAGCCCCCTAATTCTCCT
ATTTATAATTGGGAAAAAATTTACCCTATGTCCAAAAAAAAGCCCCCCAA
AAGTGGTCAATTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_f13.g1 MSMg01no373_f13.g1 CHROMAT_FILE:
MSMg01no373_f13.g1 PHD_FILE: MSMg01no373_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:17 2005
         (515 letters)



>mm_chr1_119434729_119435643
          Length = 915

 Score =  949 bits (491), Expect = 0.0
 Identities = 509/515 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgggtagctgaggatggctttgtatttctgatccctctgactgttggaaatgtaggta 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 actgggtagctgaggatggctttgtatttctgatccccctgactgttggaaatgtaggta 260

                                                                       
Query: 61  tacaccactgctgttaaatagtctgtgcttattcattatgcctaaattttctgtatatga 120
           |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 tacaccactgatgttaaatagtctgtgcttattcattatgcctaaattttgtgtatatga 320

                                                                       
Query: 121 ggcaggcatacatttacagacttcccactgatttattataaatttgattattctcaaaga 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcaggcatacatttacagactgcccactgatttattataaatttgattattctcaaaga 380

                                                                       
Query: 181 tgcatgtttaacgctagttgtaatgggtctgcatgggctactttgctcttagcacaagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcatgtttaacgctagttgtaatgggtctgcatgggctactttgctcttagcacaagga 440

                                                                       
Query: 241 gttgtctccagtttcacttcctgcaggttctctttgtctgatttgttgaggtttccctgg 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgtctccagtttcacttcctgcaggttctctttgtctgatttgttgaggtttccctgg 500

                                                                       
Query: 301 aatcagcaccaagtagggaccaatgttgaatatcaatgagtctcaagagcattaagcctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatcagcaccaagtagggaccaatgttgaatatcaatgagtctcaagagcattaagcctt 560

                                                                       
Query: 361 aggaatactcatattcacataaacaattttatgagaaatatgcttaagctaaaaatatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggaatactcatattcacataaacaattttatgagaaatatgcttaagctaaaaatatct 620

                                                                       
Query: 421 cttaaagtcctgtagctccctcttccagcactgtttcagtccaagctctagaaatataat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttaaagtcctgtagctccctcttccagcactgtttcagtccaagctctagaaatataat 680

                                              
Query: 481 ttaactggactcatagattccaatccattgttagt 515
           ||||||||||||||||||||||||||||| |||||
Sbjct: 681 ttaactggactcatagattccaatccattattagt 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)