BAC Information

Click to search

BAC

Clone NameMSMg01-373K01
Chromosome1 (Build37)
Map Location 16,237,764 - 16,238,140
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10
Downstream geneEG665282, Stau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1, Gdap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373K01.T7 (MSMg01no373_k01.b1)MSMg01-373K01.TJ (MSMg01no373_k01.g1)
ACCAG479613AG479614
length7191,131
length of high quality
(start - end)		601 (15 - 615)---
definitionCHROMAT_FILE: MSMg01no373_k01.b1 PHD_FILE: MSMg01no373_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:37 2005CHROMAT_FILE: MSMg01no373_k01.g1 PHD_FILE: MSMg01no373_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACTATTTCCAGAGGATCCGCGGAATTCAGTAGATATGCTTTATGTGT
CAATTGATGTGGACACAGTTCAATCCATAGAAGGACTCTCGTAACAGGTC
AAAGACTATAGACTAGACATGTGAATTTTAACAGAACATTATATGCTCAG
ATCTGTCCCTGCAGCAGGAAAGCCAATCAGGAGGCTGGAGGAGGGGCCAG
AGTTTTCTCCTCTTGGCTCCCTGCCTCCTCAGGTTACTCTTATGCTAGAT
TCCATGGAGAGGCCTAGACGAATGGAGCTTGCTTGGGGACCCCTCAGCTT
CCCTCAGTGCCCACTGTGCCTATGGGATCCCTCTGCACACAGAGAAAGCA
TCATTACCCTCCCAGCAGTGTGCAAGGGCAGCCATCTACTTAATCTGACA
TAGACCTGGGGAGGCTCGCACAGGCCAGGGCCAAACAGCAGCTCACCATA
GGGTGCTCAGTGAAGATGCCTGGGGTTGGTGTACTGTGAGTGGTGGAGTG
AAGCACACAGGCTGAGAATTCCTCCTCTGAAACGCTTCCAATCTGAAGTG
ATTCTGATCTCGAGGCTTTGGATTTGCATATAGATGTTTGTAGACTTTCC
TGACTGAGCACCAGGATCCCTATCCCCCACCACTGCCCCCTTANTCATAG
ATGCTCTGAAATCTGAAAATTAAATGCTCCTGGTTTTGAATTGTGAAGTT
TTTCAGATTTCACAGTTTG

TGAATGNCCAATGAGCCCNACNATGTTATGTACTTATTTTTTATTTTNTT
NCCCCTCCAGCCCAAGAGCACNCTCCTCCTACCCCTCCTCTCTCCCCTCC
TCCCTAGTCCCACAGTATACACTTTTTTCCCCCCTTTTTCCTTTATTACC
CACCCTCTTCTTTTCTCTTCTCTATCTCCCCCCCTCTTCTCCTATCTTTC
TTTCCCTTCCCCCTCCTTCTATCTCCTTATCCTAATTATTCTCTTCCTTT
TCACATCTCCATTCCTCCCCCTATCACTTTCCATTTTCTTTTTTCACAAT
TCCCCTTTCCCCTCTTCCCATTACTTCTCCTTCATACTCTCACCTCCTAC
CCTCCCCCCTCCCTCCTCACACCCTTTCCCCTTTATCCCCCCTTTCTTAC
ACATATCACCCTATTTCTCCCCATTTCTTCTTCTTCCCCTTCCCTTCCTC
TACTCACCATTCCTTCATACCTTCCTTCTCCCCGTTCTTCCTACATTCTC
ACTCTTTTTCAGTTCCTTACTCTCTTCCACTTTTCTACCCTTCTTTCCAC
CCCCACTTTTCCCCCATTTCCCCACACTTCCCCACTTTTCCTCCATCCCT
CCTACCTCTCTATCCCCTCTACCCCTCCTTCTCCCCCTTCATATTACAAT
TTTTTACTTCCTCCATACTTCATATCCCTTATTTTCTTGTTTTTCACCCC
TTCTCACCCTTTATCACCTTTTCTTTTCCTTTTTCAGACTTTTTACACCC
TTTTTCACCTCTCTTCCATTTTAGTTCCATCCTTTCCTTCCTCACCTTTT
CTTGCANACCAACACTTTTTCTCTCCTATCCTTTCCCTTTCACCACTTCT
TTCCTTCCTTTTCCTCACCTCTTTTTCTCCTCTTCTCTCCCCACATTTCC
CATCTCCTTCACCTTTAAATCTTCCACTTCCACCTTATTTTTTATATTCT
CTTCCTATTCTTCTTCTCAATTCCTTTCACTCTCTCTCTTATATCTCCTC
CATCACTTCTTCTACCCAACTCTTTCTTCAATCCTCCTCTCATATCTTTC
TTCATCANCTCTCTCTTTTCTTCTTCTTTTCTCTTTCATTTCTCTAATCA
CTTACTTCTTTCTTCACCTCTCTTTACATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_k01.b1 MSMg01no373_k01.b1 CHROMAT_FILE:
MSMg01no373_k01.b1 PHD_FILE: MSMg01no373_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:37 2005
         (601 letters)



>mm_chr1_16237555_16238554
          Length = 1000

 Score =  692 bits (358), Expect = 0.0
 Identities = 373/378 (98%), Gaps = 1/378 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  ggaattcagtagatatgctttatgtgtcaattgatgtggacacagttcaatccatagaag 69
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ggaattcagtagataagctttatgtgtcaattgatgtggacacagttcaatccatagaag 269

                                                                       
Query: 70  gactctcgtaacaggtcaaagactatagactagacatgtgaattttaacagaacattata 129
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 270 gactctcgtaacaggtcaaagactatggactagacatgtgaattttaacagaacattata 329

                                                                       
Query: 130 tgctcagatctgtccctgcagcaggaaagccaatcaggaggctggaggaggggccagagt 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgctcagatctgtccctgcagcaggaaagccaatcaggaggctggaggaggggccagagt 389

                                                                       
Query: 190 tttctcctcttggctccctgcctcctcaggttactcttatgctagattccatggagaggc 249
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 390 tt-ctcctcttggctccctgcctcctcaggttactcttatgctagattccatggagacgc 448

                                                                       
Query: 250 ctagacgaatggagcttgcttggggacccctcagcttccctcagtgcccactgtgcctat 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ctagacgaatggagcttgcttggggacccctcagcttccctcagtgcccactgtgcctat 508

                                                                       
Query: 310 gggatccctctgcacacagagaaagcatcattaccctcccagcagtgtgcaagggcagcc 369
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gggatccctctgcacacagtgaaagcatcattaccctcccagcagtgtgcaagggcagcc 568

                             
Query: 370 atctacttaatctgacat 387
           ||||||||||||||||||
Sbjct: 569 atctacttaatctgacat 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1000
Length adjustment: 10
Effective length of query: 591
Effective length of database: 990
Effective search space:   585090
Effective search space used:   585090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |