TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGGATTTTAAAAATATAAAATTTCTCCAAATGTTGCATATATAT
GTTCCTGATGATTTTATATCAAAGCATAATTTAAATGTGTCAGTCACATC
ACCCTAAATTTTACTTTAATGAAAAAAAAGAGTGTTTAAAGATGCCATCA
CCTACTCTTAATTCTTCTCTGCATATTACATTCTGAAAACAAAATCACAA
AGCTGAAGAGATTCTTTTTGGAACCCTCCTCTTCTAAAAGTTTTCCTTTT
CCTTCTACATATTCTTTGGTTTTCAAACTGTCAATTTATCATGTCCTCTT
TTTTCCTCTTGTATATTTGTGTGTGTGTGTGTTTATGTGTTTGTGTGCAT
ATGCATGTACAGATGTGTGCCTTTGCAATGGCATATATGTGCATATCAAA
AGATAACCTGTGCTATGGTTCTCACCTTTGATCATGTTTGAAAACCAGAC
CTTTCTTGTTGGCCACTGTGTATACCAGACTTACCAGCCCATAAGATTCC
AGGTATTCTCCTGTCTCAGGGTCCTATCTTACAATAGGAGACATGTATCT
GTCTTTATTCATTCTCAGAAATCANATTAAGGTCCTCATACTTGTGTGGC
AAGTGTTTTTCTCATTTAATAGCCTTCCATGTCTCAGGTTAATTATCAAT
GAACAACATATATAATATGAGCTACCCCAATTCTTAACGTTCTCAACTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAAACCTGATAAACAACTTCGGG
GAGTAGCTGGATATAAAATTAACTCAAGTCAATGGCCTTTCTCTACATGA
AGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATA
GTCACAAATAATAAAAAATATCTTGGTGTGACTCTAACTAAAGAAGTGAA
AGATCTATTTGATTAAAAGTTCAAGTCTCTGAAGAAAGAAATTAAAGAAG
ATCTCAGAAGATGGAAAGATCTCCCATTCTCATGGATTGGCAGGATCAAC
ATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAAT
CCCCATCAAAATTCCAACTCAATTCTTCAATGAATTAGAGAGAGCAATCT
GCAAATTCATCTGGAATAACAAAGAACCTAGGATAGCAGAAACTCTTCTC
AAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGAACTAAAGCTTTA
CTACAGATAGATTGTAATAAAAACTGCATTGTACTGGTATAGTGACAGAC
AAGTAGACCAATGGAATAGAATTGAACACCCAGAAATGAACCCACATACC
TATGGTCACTTGATCTTCGACAAGGAAGCTAAAACCATTCAGTGGGAAAA
AAGACAGCATTTTCAACAAATGGTGGTGGCACAACTGGTTGTTATGN

Query= MSMg01no373_o03.b1 MSMg01no373_o03.b1 CHROMAT_FILE:
MSMg01no373_o03.b1 PHD_FILE: MSMg01no373_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:56 2005
         (572 letters)



>mm_chr1_102903762_102904733
          Length = 972

 Score = 1023 bits (529), Expect = 0.0
 Identities = 562/577 (97%), Gaps = 10/577 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttggattttaaaaatataaaatttctccaaatgttgcatatatatgttcctga 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gaattctttggatcttaaaaatataaaatttctccaaatgttgcatatatatgttcctga 256

                                                                       
Query: 65  tgattttatatcaaagcataatttaaatgtgtcagtcacatcaccctaaattttacttta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgattttatatcaaagcataatttaaatgtgtcagtcacatcaccctaaattttacttta 316

                                                                       
Query: 125 atg-aaaaaaaa----gagtgtttaaagatgccatcacctactcttaattcttctctgca 179
           ||| ||||||||    |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 317 atggaaaaaaaatattgagtgtttaaagatgccaccacctactcttaattcttctctgca 376

                                                                       
Query: 180 tattacattctgaaaacaaaatcacaaagctgaagagattctttttggaaccctcctctt 239
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 377 tattacattctgaaaacaaaatcacaaagctgaagagattctttttg-aaccgtcctctt 435

                                                                       
Query: 240 ctaaaagttttccttttccttctacatattctttggttttcaaactgtcaatttatcatg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctaaaagttttccttttccttctacatattctttggttttcaaactgtcaatttatcatg 495

                                                                       
Query: 300 tcctcttttttcctcttgtatatttgtgtgtgtgtgtgt----ttatgtgtttgtgtgca 355
           |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||
Sbjct: 496 tcctcttttttcctcttgtatatttgtgtgtgtgtgtgtgtgtttatgtgtttgtgtgca 555

                                                                       
Query: 356 tatgcatgtacagatgtgtgcctttgcaatggcatatatgtgcatatcaaaagataacct 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tatgcatgtacagatgtgtgcctttgcaatggcatatatgtgcatatcaaaagataacct 615

                                                                       
Query: 416 gtgctatggttctcacctttgatcatgtttgaaaaccagacctttcttgttggccactgt 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gtgctatggttctcacctttgatcatgtttgaaaaccagacctttcttgttggccactgt 675

                                                                       
Query: 476 gtataccagacttaccagcccataagattccaggtattctcctgtctcagggtcctatct 535
           ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 676 gtataccagacttaccagcccataagatttcaggcattctcctgtctcagggtcctatct 735

                                                
Query: 536 tacaataggagacatgtatctgtctttattcattctc 572
           |||||||||||||||||||||||||||||||||||||
Sbjct: 736 tacaataggagacatgtatctgtctttattcattctc 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)