BAC Information

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BAC

Clone NameMSMg01-373O15
Chromosome1 (Build37)
Map Location 97,486,433 - 97,486,994
singlet/doubletsinglet
Overlap geneSt8sia4
Upstream geneLOC100040685, LOC383603, Tmem157, LOC100041686, Rnu7-ps2
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373O15.T7 (MSMg01no373_o15.b1)MSMg01-373O15.TJ (MSMg01no373_o15.g1)
ACCAG479832AG479833
length7261,457
length of high quality
(start - end)		562 (58 - 619)---
definitionCHROMAT_FILE: MSMg01no373_o15.b1 PHD_FILE: MSMg01no373_o15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:59 2005CHROMAT_FILE: MSMg01no373_o15.g1 PHD_FILE: MSMg01no373_o15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTTA
ACTTGCATTTTTCTGTAGTTAAGTACAGTTCCATTATGACTGCATTTTTT
AAAACAACATGAACTTACTCATAGAGTGACTTACTGACTTACATACGTGA
CTGAATTGACTGGTGGCCAGGCTTTCTGTTTCTTTTGAAAGCAGAACTAT
ATTCTTACTTCTGCTTTTGCCTGCAGCAACTTAACATGACTTCCTGTTTC
TTGGGGAAGGCAATCAGAAGAAAGCAGAAATGGCATGAAAAATGTGTATG
TTTTGTTTTTCTAATTCAGGCAATCTAAAATGAATGAAGAGCACAGCAAA
GGTATACATATATATTATATATGTATTCATATTCTGGACAAGGATAGTCA
TGTAGTACAGTTACCAAATTTTTAATATTAGCTGCAGTGTTTTTTAAAAC
AGTGATAGAATCTCAGGATAAAAATAACAGTTTCTGAGAATCCATGTATC
TATCAGAAAAGAAAAGAGAATGGATATGGGCATTTCATAACCAGTATATA
CCTTTATCATTAAATTTCATTTCTATTTAGCAATTCAATACATTTAATAA
AAAGTGTTAAATATGTGTTATGTAGATGTTAAATTGAAAGTCTAATACAC
TGGATGTGTGATCATTGGATAATATATAAAACTTATTTTGACCCAATGCA
GATCTGTGTTCCCCCCACAGCTAAAT

TACTCGTCGCACCATCTTTCTACTACACACTGTCTTCTCGCTCTCTCTCT
TTTNCACCCTATAACTAGCTGCCCTCAAGTTCTCAAGGCACACTCCATGA
AAGTGATCATGTAGCACTCCCCCACAAGGCAGAGGCGAGGCTGCGCGCGG
TCGCGGTCTCCCGTCGCCGGATATCTCGGCGCCGTCGCATCCGTGTAGCG
CTGAGCTCGGGCCGTCGCAGACTACCCGAGCACCGGAGCGCGTGGTCGCG
TGCGAGGACGCACTCGTAGGTCGCGTGTCTACGCAGTCGTTGTGTGGAGA
GACAGATACGCAGCATGCGCAAGAGATATTTACATTCACTGGCCCCGCAC
TCACCGCTTGCCATGTGTGCACGCTCTGATAAAATCAGCCAGCTATATCC
GTACATCACCTATATGCTAATTATTTTTACATCTAATTCCACCAGCGCGT
CATATAGCCATCCGTAGCCGACCGACTTCGCATATACGACTGCAGACGTA
TCGCGATCACACTGCCATATCGACACACGACACTCACACGCCTCCTACGA
ACATAAACCCGTTCGCCACCTACCCGCCTCCAACAGACTCTCCACAAGAT
ACCCGCGAGCACGCCTGCTCCGACCAGTCCGATCCCGCTCCTACTGCTGT
CCTCGATCTACACTCCGCCGAGTTCGTCATGCGCGCACCACGATCACATC
GCGTACTCTGACGCCCGCTCATGTAACGTTGAAGGGAATCACTCGTGCGC
TCTCCTGCCCACTTTCTCGTCATACCGCTGCAGNGCATATCATCAGGTAC
CGCTATGTCATTCATGTGCAATAACTACCACGCGTTGCCGAACTCTCTCG
TACATCTGACGTCTATCTCTATACCTCACTATAGCTCGACATACACATTC
GCGTCNCATTCTCGCATCTCTATCAATTCTCACGTANACATTCATTTCGA
CTCATGTCGCACCGCTCCTCTTGGCGCCGCGGCTGCAGCTGTCTGCACGT
TTTCATCATCACTTTATGAATGTCCCGTTATCAGTGTCCGCTACACCTGC
TCGGAGCATCGTCACGCCGCAGCTGCTTGTGCGCTCGTGGCACACTTGAC
TAACAGGACTTTGACGAGTTCAGACGTACCCATGCACTATCGATGCTCAC
GACATTACATGTATCGTATGTCTATGGCACATCATGTGTGCACGATACAG
ACTATCGCCCAATCNACACTACATAAGAGGACTATACTATCCGATTCTAT
CACTCGCACGCTTATTCACTTATAGACATGTCAGCAGGTTCTATAANTNC
ATTGCAGCGTTCACAGCGCACATGTCACCGTCTATGCACCATACGTCCGA
CGCTAGCATATGCGCATACGAACGTACGCCTGNCTCTAGCAATATACAGT
TTNTNGCTACTGTCAATCCGTCTCTCGCGATCGTGTCGTANACGCGAGTG
CATCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_o15.b1 MSMg01no373_o15.b1 CHROMAT_FILE:
MSMg01no373_o15.b1 PHD_FILE: MSMg01no373_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:59 2005
         (562 letters)



>mm_chr1_97486233_97487194
          Length = 962

 Score = 1048 bits (542), Expect = 0.0
 Identities = 557/562 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttctgtagttaagtacagttccattatgactgcattttttaaaacaacatgaactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 tttttctgtagttaagtacagttccattatgactgcattttttaaaacaacatgaactta 703

                                                                       
Query: 61  ctcatagagtgacttactgacttacatacgtgactgaattgactggtggccaggctttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ctcatagagtgacttactgacttacatacgtgactgaattgactggtggccaggctttct 643

                                                                       
Query: 121 gtttcttttgaaagcagaactatattcttacttctgcttttgcctgcagcaacttaacat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 642 gtttcttttgaaagcagaactatattcttacttctgcttttgcctgcagcaatttaacat 583

                                                                       
Query: 181 gacttcctgtttcttggggaaggcaatcagaagaaagcagaaatggcatgaaaaatgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gacttcctgtttcttggggaaggcaatcagaagaaagcagaaatggcatgaaaaatgtgt 523

                                                                       
Query: 241 atgttttgtttttctaattcaggcaatctaaaatgaatgaagagcacagcaaaggtatac 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 atgttttgtttttctaagtcaggcaatctaaaatgaatgaagagcacagcaaaggtatac 463

                                                                       
Query: 301 atatatattatatatgtattcatattctggacaaggatagtcatgtagtacagttaccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 atatatattatatatgtattcatattctggacaaggatagtcatgtagtacagttaccaa 403

                                                                       
Query: 361 atttttaatattagctgcagtgttttttaaaacagtgatagaatctcaggataaaaataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 atttttaatattagctgcagtgttttttaaaacagtgatagaatctcaggataaaaataa 343

                                                                       
Query: 421 cagtttctgagaatccatgtatctatcagaaaagaaaagagaatggatatgggcatttca 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 342 cagtttctgagaatccatgtatctatcagaaaggaaaagagaatggatatgggcatttca 283

                                                                       
Query: 481 taaccagtatatacctttatcattaaatttcatttctatttagcaattcaatacatttaa 540
           ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 282 taaccagtatatacctttatcattaaatttcatttttatttcgcaattcaatacatttaa 223

                                 
Query: 541 taaaaagtgttaaatatgtgtt 562
           ||||||||||||||||||||||
Sbjct: 222 taaaaagtgttaaatatgtgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space:   525504
Effective search space used:   525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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