Query= MSMg01no373_p02.b1 MSMg01no373_p02.b1 CHROMAT_FILE:
MSMg01no373_p02.b1 PHD_FILE: MSMg01no373_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:01 2005
(561 letters)
>mm_chr1_41458755_41459715
Length = 961
Score = 878 bits (454), Expect = 0.0
Identities = 463/466 (99%)
Strand = Plus / Minus
Query: 5 gaattcacacaataatccaagtgtaattacttttatttaaagattatattgcattatttt 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gaattcacacaataatgtaagtgtaattacttttatttaaagattatattgcattatttt 407
Query: 65 ctgttacgtccttttgaaattacttctcaaagtattggagtaattttcagttgtattctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ctgttacgtccttttgaaattacttctcaaagtattggagtaattttcagttgtattctg 347
Query: 125 gtatgggcaaaatggtggaggtaactatcccaaattattctttcaatgcatatatgtaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gtatgggcaaaatggtggaggtaactatcccaaattattctttcaatgcatatatgtaaa 287
Query: 185 acattttcattaacaatatgactgctttcagagtcctggcccaaaatgcaccttagtaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 acattttcattaacaatatgactgctttcagagtcctggcccaaaatgcaccttagtaca 227
Query: 245 caagatgatagcacattggctatctcatttttgtgaccggatgcataacaggagtgactt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 caagatgatagcacattggctatctcatttttgtgaccggatgcataacaggagtgactt 167
Query: 305 gcaaggggaaggtttgagtttagcttactcttaaagcttgtagtccatcatgctgaaggg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gcaaggggaaggtttgagtttagcttactcttaaagcttgtagtccatcatgctgaaggg 107
Query: 365 taaataagagaattcaccacagcaaaataaggtgccagggcatacaactgaaagattatg 424
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 106 taaataagagaattcaccacagcaaaataaggtgccagggcatacaactgaaagattagg 47
Query: 425 aagccaaaatctaccacgactaaagagcatatcagccgcaaaagtt 470
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 aagccaaaatctaccacgactaaagagcatatcagccgcaaaagtt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_p02.g1 MSMg01no373_p02.g1 CHROMAT_FILE:
MSMg01no373_p02.g1 PHD_FILE: MSMg01no373_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:01 2005
(541 letters)
>mm_chr1_41415453_41416395
Length = 943
Score = 1004 bits (519), Expect = 0.0
Identities = 537/543 (98%), Gaps = 2/543 (0%)
Strand = Plus / Plus
Query: 1 caagtgtcatgcctatagataagcaagaaaatgtgaaaactgaaaatttcaaaatattaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtgtcatgcctatagataagcaagaaaatgtgaaaactgaaaatttcaaaatattaa 260
Query: 61 atgcctttgattgacatcaaatttcctctgaaattgttccct-ctgacaggaatggatat 119
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 261 atgcctttgattgacatcaaatttcctctgaaattgttcccttctggcaggaatggatat 320
Query: 120 attacatttaattttcctttcttaaaaaataaggcatgtgtctccttagggaccatcacc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attacatttaattttcctttcttaaaaaataaggcatgtgtctccttagggaccatcacc 380
Query: 180 catttttt-agactgggtgtccacagctttcacagataaaacaatacatgacagaggagg 238
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catttttttagactgggtgtccacagctttcacagataaaacaatacatgacagaggagg 440
Query: 239 acattttaccttggtatctcagggctggctcagacatggaggactctgtgtctctaagca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acattttaccttggtatctcagggctggctcagacatggaggactctgtgtctctaagca 500
Query: 299 ggaccaacacagctttgccttctggttcattagactgagaaatccctttcttgacctatg 358
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaccaacatagctttgccttctggttcattagactgagaaatccctttcttgacctatg 560
Query: 359 cccgagtacaacagacccatgtttaagtaaaagcacaggaaatgacagggagacaaggct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccgagtacaacagacccatgtttaagtaaaagcacaggaaatgacagggagacaaggct 620
Query: 419 gagacacctgtctagagcacggttgacccaccaggcttaactaatttctccctgacctct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagacacctgtctagagcacggttgacccaccaggcttaactaatttctccctgacctct 680
Query: 479 gaccctgatttccacaactccacagggatttgtatctttcttccaaaagcccccacacct 538
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacccagatttccacaactccacggggatttgtatctttcttccaaaagcccccacacct 740
Query: 539 gca 541
|||
Sbjct: 741 gca 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 943
Length adjustment: 10
Effective length of query: 531
Effective length of database: 933
Effective search space: 495423
Effective search space used: 495423
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
