NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTCCTCTGGGGTTTACCAATCAGCAAAAGAATTAAGGAGGGGAA
AATAAAGAAGCAAATGTGTAGATACCTAAAGCCATTCTTATGCATCAGGC
CTCCCAGTCTAAAGAGACCATCATTTGCCATTCGCATAGCTAGGAAGAAG
AGGGCATGATTTCCATGCACACAGACCTCAGTTCAAATTCAGTCCTTTTA
AAGCAGGCATCATCTATTGCTGACATACGAGGCCTGGCAAGCAGTAGTCT
TCCATCTTAAAGAAGATACAAAACCAATCAGTACATTGGTGTGATGTGTA
GGGCGGGGATGGGGAGTACTGCAAGCCGCTCACCCTTAAAGCTCCAGAAC
AGGAAGTCAGTGTGAATGGGGAGGAGGGAAGCACTGTTTAAGTCTGACGT
TGCAAGTTCAGAACATAAAATTTGTATCGAATCTTAGTGACTATTGGCTC
CTAGGAATGATTTATTTAAGATGTCCTAGAGAGGGGCTGGAAAAGGGGAA
AGGACAGTCTCTTGTGNCTAAATAGCACAGACTCAAAGAGAAAGTGTTTC
TTTTCATTTGGATAAGGGATAAACCCAGGGCCTTGTATTGGCATGTCCGG
GCAACTGTATGAGTGGAGCCCCACCCAGCCCTCAGAAATATTTTTCTAAT
TGGAGGGTTTATTTTCTAACCAAAATATCCCCTCCTTTTCCCCTGGAAAA
TAATTATTGTTTTCCCAAACTTAAAGGCCCCTTTGGGACCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGTAAGGAAGTTACCTATTCAGTAACTAGTTAAGCATTACAAA
GGACCAAGCAGGAATAGCTCCCGGCTAGTCTGCAGAGTGTTTACTTGAGG
CAGTAACCAGTCTTACCCAAACACAATGGCCTAGCGAATAGGTGGGTTTA
CCATGAGAAAAGTTAAGGAATCCCACTGAGACAGGTTTCTTCACTAGGCC
CAAAGAAATCAGGCAGAACTATAGAGCATAAATAAATTTACCTAGGCCTC
CCCGCACATATGGAGGAGATGAGCAGCTTGATCTTCATGTGGGTCCCAAA
CAACTGGAAGAGGGGCTGTTCCAAAAGCTGTTGCATGTCTGTGGGATATG
TTCTTCTAGCTGGGCTGCCTTGTCTGGCCTCAGTGAGAGAGGAAGCACCT
TGCATTGAAGAGACTTGAAGTGCCAGGGTGGGAGGATACCCATGGAGGGC
CCACCCCACTCATAAGGGAAGCAGAGGGGATGTAGTGGGAAGTATTGTTT
CAATTTTCTTTCTGTTTTCTTTCCTTCTCTTTCCTCCCCCTTCTCTCCCC
TTTTCTTGTTTTCCCTTTCTTCTCTCTCCTTTCTTATCTATTTCTCCTTT
CTTTCCTCCTTTTCTTTCTTTCTCTTATTCTTCTTCTCCTCTTTTTCTTC
TAATTTCCTCCCCTTTCTCTATTTTCTTTTTTTCCTTCGTTCTATTTTTT
ATATCTTTTTTTTT

Query= MSMg01no374_a20.b1 MSMg01no374_a20.b1 CHROMAT_FILE:
MSMg01no374_a20.b1 PHD_FILE: MSMg01no374_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:09 2005
         (498 letters)



>mm_chr1_53981274_53982170
          Length = 897

 Score =  764 bits (395), Expect = 0.0
 Identities = 419/427 (98%), Gaps = 1/427 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcctctggggtttaccaatcagcaaaagaattaaggaggggaaaataaagaag 64
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 630 gaattcctcctctggggtttaccaatcagcaaaagaattaaagaggggaaaataaggaag 571

                                                                       
Query: 65  caaatgtgtagatacctaaagccattcttatgcatcaggcctcccagtctaaagagacca 124
           ||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 570 caaatgtatagatacctaaagccattcttatgcatcaggcctcccagtctggagagacca 511

                                                                       
Query: 125 tcatttgccattcgcatagctaggaagaagagggcatgatttccatgcacacagacctca 184
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tcatttgccattcacatagctaggaagaagagggcatgatttccatgcacacagacctca 451

                                                                       
Query: 185 gttcaaattcagtccttttaaagcaggcatcatctattgctgacatacgaggcctggcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gttcaaattcagtccttttaaagcaggcatcatctattgctgacatacgaggcctggcaa 391

                                                                       
Query: 245 gcagtagtcttccatcttaaagaagatacaaaaccaatcagtacattggtgtgatgtgta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gcagtagtcttccatcttaaagaagatacaaaaccaatcagtacattggtgtgatgtgta 331

                                                                       
Query: 305 gggcggggatggggagtactgcaagccgctcacccttaaagctccagaacaggaagtcag 364
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 330 gggcggggatggggagtactgcaagccgctcactcttaaagctccagaacaggaagtcag 271

                                                                       
Query: 365 tgtgaatggggaggagggaagcactgtttaagtctgacgttgcaagttcagaacataaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 270 tgtgaatggggaggagggaagcactgtttaagtctgacgttgcaagttcag-acataaaa 212

                  
Query: 425 tttgtat 431
           |||||||
Sbjct: 211 tttgtat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 897
Length adjustment: 10
Effective length of query: 488
Effective length of database: 887
Effective search space:   432856
Effective search space used:   432856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)