BAC Information

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BAC

Clone NameMSMg01-374G11
Chromosome1 (Build37)
Map Location 18,591,236 - 18,591,748
singlet/doubletsinglet
Overlap genenone
Upstream genePi15, Crispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17
Downstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374G11.T7 (MSMg01no374_g11.b1)MSMg01-374G11.TJ (MSMg01no374_g11.g1)
ACCAG480208AG480209
length761753
length of high quality
(start - end)		505 (48 - 552)518 (57 - 574)
definitionCHROMAT_FILE: MSMg01no374_g11.b1 PHD_FILE: MSMg01no374_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:38 2005CHROMAT_FILE: MSMg01no374_g11.g1 PHD_FILE: MSMg01no374_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGATGCTTTCCCTTTAAGGGTATCTATATTATTCTAATCAATA
TTAAATTATTTAACTTAATTCCTGAATCAAACACACACACACACACACAC
ACACACACACACACGAGAAAGAGAGAGAGAGACAGAGACAGAGACAGAGA
CAGAGAGACATGGACACCTCAATGTAGACGATCTTTCATTGAAAATATTT
TTCCATGTAAGTCTAGGTTGTGTTAAATTACAGTTAAGCACTGATGGAAA
ACACTTAACTATGAGTATAAAGAATGTTTCTACTTTTAAAATATGACTTT
TAGGGCAGCAAACATAGATCAATGCAGGTCTTTTGTAGGTCGTGTAAGGT
CTCAAGTTCAATCCCAAGTACTCCGAATTTTCTCTCTCTCTCCTCTCTCC
TCTCTCCTCTCTCCTCTCTCCTCTCTCCTCTCTCCTCTCTCCTCTCTCCT
CTCTCCTCTCTCCTCTCTCCTCTCTCCTCTCTCCTCTCTCCTCTCTCCTC
TCTCCTCTCTCTCCCCTTTCTCTTTCCCCTCTCCTCTCTCAATCTCTCCT
CTCTCTCCCCTCACTCCTCCACTTTATCACTTACTCCTTTTCCTCTTTTT
CCCTTCCTTTTTTTTTTCTTCTTTCTCNTTCCTTTACACTTTTCCTTCTT
CCTTCTTTCCTTTAATACTTCTCTCCTTCCTTATCTTTTCCATACCTCCA
CTCCTTTTTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAATGAAAATGAAGACACAACATACACAAACATATAAGGCACAGT
GAAAGCAGTACTATGAGGAAAATTCATAGCACTAAGTGCCCTCATAAAGA
AACTGGTGAGATCCTATACTACCAACTTAACAGCACACCTAGAAGTTCTA
GAACAAAAAGAAGCAAACACCCCTAAGAGGAGTAGACAGCAGAAATAAAC
TCAGGGCAGCAATCAATGAATTAGAAACATAAAAAACAATTCAAAGAATC
AACAAAACCAAAAGCTGTTTCTTTGAGAAAATCAACAAGATAGATACTCC
CTTAGCCAATCTAACCAAATGATACATTGACAGTGTCCAAATTACAAAAA
TCAAAAATGAAAAGGGAGACATAACAACAGAAACTGAGGTAATTTTTTAA
AAGTCATTAGCTCCTACTACAAAAGACTTTACTCAGCAAAACAAAACAAA
ACCTGGAAAATTTAGATGAGATGGATGACTCTTANGACAGATACCAGCTT
GCAATCCCACCAACAATGGAGGAGGTGTTCTCTTTCTCCACACCCTTGCC
AGCATTTGCTGTCACCTGGATTTTTTATCTTACCTATTCAGACTGGTGTG
AGGTGGAATCTCAAGGTGTTTTGAATTGCATTTCCCGGAGGAGGAAAAAA
GTTAAATTTTTTTTCTGGGCTCTCCGGCCTTTAGGATTCCCCCAGTGGAA
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_g11.b1 MSMg01no374_g11.b1 CHROMAT_FILE:
MSMg01no374_g11.b1 PHD_FILE: MSMg01no374_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:38 2005
         (505 letters)



>mm_chr1_18591044_18591948
          Length = 905

 Score =  833 bits (431), Expect = 0.0
 Identities = 489/519 (94%), Gaps = 25/519 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagatgctttccctttaagggtatctatattattctaatcaatattaaattattt 64
           ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 193 gaattcagatgcttttcctttaagggtatctatactattctaatcaatattaaattattt 252

                                                                       
Query: 65  aacttaattcctgaatcaaaca------------cacacacacacacacacacacacaca 112
           ||||||||||||||||||||||            ||||||||||||||||||||||||||
Sbjct: 253 aacttaattcctgaatcaaacacacacacacacccacacacacacacacacacacacaca 312

                                                                       
Query: 113 cacacgagaaagagagagagagacagagacagagacagagacagagagacatggacacct 172
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 313 cacacgagaaagagagagagagagagagacagagacagagacagagagacatggacacct 372

                                                                       
Query: 173 caatgtagacgatctttcattgaaaatatttttccatgtaagtctaggttgtgttaaatt 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 caatgtagacgatctttcattgaaaatatttttccatgtaagtctaggttgtgttaaatt 432

                                                                       
Query: 233 acagttaagcactgatggaaaacacttaactatgagtataaagaatgtttctacttttaa 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 acagttaagcactgatggaaaacacttaactatgagtataaagaatgtttctacttttaa 492

                                                                       
Query: 293 aatatgacttttagggcagcaaacatagatcaatgcaggtcttttgtaggtcgtgtaagg 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aatatgacttttagggcagcaaacatagatcaatgcaggtcttttgtaggtcgtgtaagg 552

                                                                       
Query: 353 tctcaagttcaatcccaagtactccgaattttctctctctctcctctctcctctctc--c 410
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |
Sbjct: 553 tctcaagttcaatcccaagtactctgaattttctctctctctcctctctcctctctctcc 612

                                                                       
Query: 411 tctctcctctctcctctctc--ctctctcctctctcctctctcctctctcc-tctctcct 467
           ||||||||||||||||||||  ||||||| ||||||||||||||||||||| |||||| |
Sbjct: 613 tctctcctctctcctctctctcctctctc-tctctcctctctcctctctccctctctctt 671

                                                  
Query: 468 ctctcctctctcctctctcctctctcctct--ctcctct 504
           ||||| |||||||||   |||| |||||||  |||||||
Sbjct: 672 ctctc-tctctcctc---cctc-ctcctcttcctcctct 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 126
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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