NNNNNNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCTCTTCTAGCTACTTTGCATTATACAACACAATGG
TGTTGATTGTTAGCTCTGTTATATGTGTTAAAACATGCGAACTAATTTAC
TCTAGCTAGCTATGAATTTGTACCCAGAGCCCAGTCTTCTCAGCCTCTAC
TTATCTTCCCCAGCTTCTAATACTCAGTGCTCCAGTCTCTACTACTGTGA
ACCCAAGTTATTTTATGATCCACATGCAAATCAGGTGCCATTTGTCTTTC
TGCACCTGGATTATTTCATTTAGCATTATGATCTTTAGACCCCATGTTGC
TCTAACTGACAGGAGGTCATACTTTTCTATGACTAAGTAATATTATGTTT
ATATCAAATTTCACTTACACATTCACTGCTATGTGAAGACGTGCTTGATT
CCATGCCTTGGCTATGTTAAGTAAGCAAGAAGCATGAAAGTTGAGATATA
TCTTGAATGTATTTATTTCACTTCCTTTGGTGATACATCCAGCAGAACTG
CTAGATCACATGGGTATTCTGTTTCTAATTATTTGGAAAGCCTTCTCTAT
TAGACAAGGTACCAATAGGACATATGCTTATGCATATGTTACATCTAAGT
GTGATAATATGTAAAAAATTATCCTCTTGCTAATAGAAGCTGGGAATCCA
GCGAAGGGCTCCCTTGTTGAGAAGGAGAACCGGAACTGTTCCGCCCTGAA
AT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCAGGCAACTAGGGTAAGGGTCTTAAGCCCACACCCACAGTGACA
CACCTATTCCAACCAGGTCACACCTATTTCAACAAGGCCATACCTCCAGA
TGGTGCCACTCCCTGGTCCAAGAATATACAAACCATCACAGTAGTCCTCT
ACCCAATTTGGTAGATAATCCTAAGAGGTTCAGAGGATGAGTTGTGGCTT
CCAGAGGGAGTCTGACAAGGTCCTGAGAGGGATTCCTACCAGGTGGGCAA
GGAGCCAGGTAGAGCTCTAGTGCCAGGTAGAACATTGGCACGGAAATCAA
GAGCCAGACCAAGTATGGAACGGGGAGGAGGATGAGGCCGTGTGGCCAGC
TGAAATGTTAGTGTCTGATACGAGGTGTACTGACCAGGCCACATTCCAAG
GCCCCCCTCTCTGCTGTCATTCATGTCTACATAGTAAGGGACACCCAGAA
GTCAGGCCAATTGTTCCTCACTGTCTGGGGGGGGAATGCTCTGGGACTCT
TCATATTGTTAGAAACTTTGGAGGTCAAGTCCCTTTTTTTAATTGGAATG
GTATTTGGCATTGGGGCGGCTTTTCTCTCGAATTTTAAGATTCTCTGTGT
ATAATTTTCTATTAAAATTGGTCAGACTTTTTATAATCAATTTTGTTTTG
TTATAGAGGTGAACGACATAATCCTCGTTATACACCCCCTTTTCTGTCAT
TTATTTCCGTTGGGTGTCCAGTG

Query= MSMg01no374_g23.g1 MSMg01no374_g23.g1 CHROMAT_FILE:
MSMg01no374_g23.g1 PHD_FILE: MSMg01no374_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:40 2005
         (420 letters)



>mm_chr1_187431245_187432064
          Length = 820

 Score =  799 bits (413), Expect = 0.0
 Identities = 416/417 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcaactagggtaagggtcttaagcccacacccacagtgacacacctattccaaccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggcaactagggtaagggtcttaagcccacacccacagtgacacacctattccaaccag 260

                                                                       
Query: 61  gtcacacctatttcaacaaggccatacctccagatggtgccactccctggtccaagaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcacacctatttcaacaaggccatacctccagatggtgccactccctggtccaagaata 320

                                                                       
Query: 121 tacaaaccatcacagtagtcctctacccaatttggtagataatcctaagaggttcagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaaaccatcacagtagtcctctacccaatttggtagataatcctaagaggttcagagg 380

                                                                       
Query: 181 atgagttgtggcttccagagggagtctgacaaggtcctgagagggattcctaccaggtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgagttgtggcttccagagggagtctgacaaggtcctgagagggattcctaccaggtgg 440

                                                                       
Query: 241 gcaaggagccaggtagagctctagtgccaggtagaacattggcacggaaatcaagagcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaaggagccaggtagagctctagtgccaggtagaacattggcacggaaatcaagagcca 500

                                                                       
Query: 301 gaccaagtatggaacggggaggaggatgaggccgtgtggccagctgaaatgttagtgtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaccaagtatggaacggggaggaggatgaggccgtgtggccagctgaaatgttagtgtct 560

                                                                    
Query: 361 gatacgaggtgtactgaccaggccacattccaaggcccccctctctgctgtcattca 417
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 gatacgaggtgtactgaccaggccacattccaaggcccccctctttgctgtcattca 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)