BAC Information

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BAC

Clone NameMSMg01-374K07
Chromosome1 (Build37)
Map Location 41,756,111 - 41,756,570
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582, 2610017I09Rik, Pou3f3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374K07.T7 (MSMg01no374_k07.b1)MSMg01-374K07.TJ (MSMg01no374_k07.g1)
ACCAG480389AG480390
length781771
length of high quality
(start - end)
460 (73 - 532)335 (59 - 393)
definitionCHROMAT_FILE: MSMg01no374_k07.b1 PHD_FILE: MSMg01no374_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:56 2005CHROMAT_FILE: MSMg01no374_k07.g1 PHD_FILE: MSMg01no374_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTAATCCTCATGTCACTAAACGACTCACTATTTTCAGAGAATCCGCGT
CATTCTGGACATCTGCCCTTGATTTTTCCTGCTTTCACAGCAAGCATTTT
TTTGTCCAAGCTCTCTCCCCAGCCTTGCTAATATTTATGTAACTAATATT
CACATGTGAGATATTTGGAATTAATTAGGACTCAATGGATTCATGGTAGC
AGACTACCATGATGACATTAGTGTTTTATAAGAGTAGGAATAGAGATACC
AGCCAGTGAGCTTGTCCTCTTGACATATGATGCCCTCTCCCATGATATTA
TGTGGCATAAAATGCTCTCTGGAGAGATCTGCATCCATGCCTTTTGCCTC
TTCGTACCCAAAATCCTAACAACAACAGCAACAACAAAAAACAAAGTTTA
ATTTTACAGTCTTATATATTTTGTCAATAGCATCAACTAAGGAATATACC
TTCGAGCTCCTATTGTTTCTTCAAACTTCACTCCTTCAAGTAATGAAGCT
GTGCATTAATGCCTGTCTATTCCAGCTTCATGGCTACTGGACAGACCCAA
CTTTGTGCTGCCATCATTTCTTGTCATCTAAACCCCTAGCATCTATGATG
TCTTATAACTGACAAATGTAAGTGGTACAATAATCCTAGCTTATATAACC
ATGCACATTCATTTTATTATGCGATGCATGAAATAAAAAACCCCCTATTA
ATTTTTCGCCCTTTACCTTCTTAATTAACATACTCAAAAATGGTTCCTTT
ATTCTTTTTAATGGCCCCTATCCTATTTTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAATGGGTGTTGGATCT
TGTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCT
TTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCGTATATTAAA
CCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTG
CTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTT
GCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGG
GTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAAAACGAGT
TGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAGNTTGTGCAGAACT
GGAATTACATCTTCTTTGAAGGTCTGATAGAATTCTGCACTAAACCCATC
TGGTCCTGGGCTTTTTTTGTTTGGAAGACTATTAATAACTGCTTCTATTT
CTTTAGGCGATATGCGACTGTTTTACATGAACCACTTGATCCTGTATCTC
CCTTTGTTCCCTGGTATCTGCCCAAACACTTTGTTCTATTTTTCCAGGTT
TTCTACATTTTTCTTACATTAACCCATTTTTCTTTGACACTAACGGCTGT
TATTACAATTATCACACATTTCTACTTTATCTCTTCCTTTTTTATAATTT
CTTTCCCTATTACTTTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_k07.b1 MSMg01no374_k07.b1 CHROMAT_FILE:
MSMg01no374_k07.b1 PHD_FILE: MSMg01no374_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:56 2005
         (460 letters)



>mm_chr1_41755911_41756770
          Length = 860

 Score =  774 bits (400), Expect = 0.0
 Identities = 446/464 (96%), Gaps = 8/464 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttcctgctttcacagcaagca--tttttttgtccaagctctctccccagccttgcta 58
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 660 tttttcctgctttcacagcaagcatttttttttgtccaagctctctccccagccttgcta 601

                                                                       
Query: 59  atatttatgtaactaatattcacatgtgagatatttggaattaattaggactcaatggat 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 atatttatgtaactaatattcacatgtgagatatttggaattaattaggactcaatggat 541

                                                                       
Query: 119 tcatggtagcagactaccatgatgacattagtgttttataagagtaggaatagagatacc 178
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 540 tcatggtagcagactaccatgatgacattagtgttgcataagagtaggaatagagatacc 481

                                                                       
Query: 179 agccagtgagcttgtcctcttgacatatgatgccctctcccatgatattatgtggcataa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 480 agccagtgagcttgtcctcttgacatatgatgccctctcccatgatattgtgtggcataa 421

                                                                       
Query: 239 aatgctctctggagagatctgcatccatgccttttgcctcttcgtacccaaaatcctaac 298
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 420 aatgctctctggagagatctgcatccatgccttttgcctcttcatacccaaaatcctaac 361

                                                                       
Query: 299 aacaacagcaacaacaaaaaacaaagtttaattttacagtcttatatattttgtcaatag 358
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aacaacagcagcaacaaaaaacaaagtttaattttacagtcttatatattttgtcaatag 301

                                                                       
Query: 359 catcaact--aaggaatataccttcgagctcctattgtttcttcaaacttcactccttca 416
              ||| |  |||| ||||| |||| |||||||||||| |||||||||||||||||||||
Sbjct: 300 ---caa-tagaagggatatatcttctagctcctattgtctcttcaaacttcactccttca 245

                                                       
Query: 417 agtaatgaagctgtgcattaatgcctgtctattccagcttcatg 460
           |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 244 agtaatgaagctgtgcattaatgcctgtctcttccagcttcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)