NNNNATTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCCATATATTTGAAAAATGTCTTCTATATTTTAATTCTAA
GTAAACTTACAATGTTAGCAAGCAGCAAGTCCTCATGTTTTTAGCAATTT
TATCATTTTGAGATAAATACAGTCATCAGTCCATTTTGATGCAAGTACAA
GACTCAGTTGCCATTAGAAAGCACATTGCATTTTTTTTTTTATGAACTGT
CTGTCATGTGCCTAATCTCTACCTTGGTTTGTATTATTAATTTTTTTGCC
AATCATTAGTTAACAGAAATGCTTTTTAAAATCATTCCCAATAAGCCAAA
GCATTTAAAAAAATAATTTGCTCAACTTCAGAGAGGTCCAACATCTCAAG
TACAAAACTGGCAATTAATGCTCATTGTTTGAATACCCCAAAATGATTAG
ATGCTCCCATGAGGGAGAAATTTGAAGTGGCCACATTTGGTACCAGGTGT
TTGAGTAAAGGGTGTTATTTGTCTTGAGATGTAATTGGGGTCAGCTATGC
AATAAAGAGGTTTAAACTTTATACCTCAGCTATTATTACTGGGCCAGCCT
CAATCCCTTTCATCAAACTCTGGTTCCATTACCACAGTAACAATCATTTT
CTCACTGGGAGTTATCAATAAGATTATAGTTATTGTCAGAACCTGTTAGC
CAGAATTACTGACTCCGCATTTGGAGTTCACAGCTGCGGAGGCTTTCCTA
AGACTCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAAT
GTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
AGAAAACTGGACATAGTACTAACGGAGGATCCAGCAATACCTCTCCTGGG
CATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGA
TGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCA
AATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCTCAA
GGAAACTCACACAATATGTACTCACTGATAAGCGGATATTACCCCCAAAC
CTAAGATACCCCAGATATAAGATATAATTTGCTAATCCTTTGAACTCCTG
ATAAATGGAGATTGGAGTGTGGCCCCTTAG

Query= MSMg01no374_l16.b1 MSMg01no374_l16.b1 CHROMAT_FILE:
MSMg01no374_l16.b1 PHD_FILE: MSMg01no374_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:03 2005
         (575 letters)



>mm_chr1_6464607_6465581
          Length = 975

 Score = 1065 bits (551), Expect = 0.0
 Identities = 566/571 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccatatatttgaaaaatgtcttctatattttaattctaagtaaacttacaatgt 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccatataaatgaaaaatgtcttctatattttaattctaagtaaacttacaatgt 264

                                                                       
Query: 65  tagcaagcagcaagtcctcatgtttttagcaattttatcattttgagataaatacagtca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagcaagcagcaagtcctcatgtttttagcaattttatcattttgagataaatacagtca 324

                                                                       
Query: 125 tcagtccattttgatgcaagtacaagactcagttgccattagaaagcacattgcattttt 184
           ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 tcagtccattttgatgcaactacaagactcaggtgccattagaaagcacattgcattttt 384

                                                                       
Query: 185 ttttttatgaactgtctgtcatgtgcctaatctctaccttggtttgtattattaattttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttttatgaactgtctgtcatgtgcctaatctctaccttggtttgtattattaattttt 444

                                                                       
Query: 245 ttgccaatcattagttaacagaaatgctttttaaaatcattcccaataagccaaagcatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgccaatcattagttaacagaaatgctttttaaaatcattcccaataagccaaagcatt 504

                                                                       
Query: 305 taaaaaaataatttgctcaacttcagagaggtccaacatctcaagtacaaaactggcaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taaaaaaataatttgctcaacttcagagaggtccaacatctcaagtacaaaactggcaat 564

                                                                       
Query: 365 taatgctcattgtttgaataccccaaaatgattagatgctcccatgagggagaaatttga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taatgctcattgtttgaataccccaaaatgattagatgctcccatgagggagaaatttga 624

                                                                       
Query: 425 agtggccacatttggtaccaggtgtttgagtaaagggtgttatttgtcttgagatgtaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agtggccacatttggtaccaggtgtttgagtaaagggtgttatttgtcttgagatgtaat 684

                                                                       
Query: 485 tggggtcagctatgcaataaagaggtttaaactttatacctcagctattattactgggcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tggggtcagctatgcaataaagaggtttaaactttatacctcagctattattactgggcc 744

                                          
Query: 545 agcctcaatccctttcatcaaactctggttc 575
           || ||||||||||||||||||||||||||||
Sbjct: 745 agtctcaatccctttcatcaaactctggttc 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)