BAC Information

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BAC

Clone NameMSMg01-374M04
Chromosome1 (Build37)
Map Location 130,100,798 - 130,240,795
singlet/doubletdoublet
Overlap geneR3hdm1, Ubxd2, Lct, Mcm6
Upstream geneMgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, LOC667109, LOC100042111
Downstream geneDars, LOC620659, Cxcr4, LOC100042732, Thsd7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374M04.T7 (MSMg01no374_m04.b1)MSMg01-374M04.TJ (MSMg01no374_m04.g1)
ACCAG480477AG480478
length772766
length of high quality
(start - end)		426 (47 - 472)528 (77 - 604)
definitionCHROMAT_FILE: MSMg01no374_m04.b1 PHD_FILE: MSMg01no374_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:06 2005CHROMAT_FILE: MSMg01no374_m04.g1 PHD_FILE: MSMg01no374_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,240,376 - 130,240,795)(130,100,798 - 130,101,325)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTAGTATTTTCTTCAGTTTTATTAATCTACATTGAATTGAGAC
TCATCATTAGTTGGTGCTTTCAGAGCATCCCTAGAATGTTGATTACTGTG
ACTAGATCATCCCAGTTTGTCGCTTTGCTAACATCTCTAAACAGATCTAT
CCATGAATACATAGTATATCACCTATATATTTGGCAAAGATTCATTCCTT
GTGGGTATTCAAGCTTATATTCATTGTGGTACTCCTTCGCTCTTTACTTT
TCCAGTCAGTCCGTATTTACGGTTGGTCGGGAACTGTCTCTGCCACCCAC
AGTCTTTGATCACAGATGTGCACCATTGCACACAGCCCAGTCTTCTCATG
CTGAGGGTAAATTTCGCAGTCCCGTTTCCTGAATATTATTTGTTTTGCTT
GTCGATGTTATTTGTTTGTTCTGCTCTTAGTTTTAGTGAGTTAGGCATGA
GATTCCCTTCTAGCTCTGTTCTGTTGAATAGTCTTGCCGAAACGGGAATT
AAGAAATGTTTATGTCCCATCTCCATTTGCCTAGGGAGTAGAAAGGGCTC
TTGCGAGCTTACCATCTTACCTCCTGCAAGCAGTTTCCTTGGATTTCTTA
CCTAGGTTTCGCGACTTATTACTCTACCACTGTACCTCCTTCTTGTCCCT
GCGCTGAACTTGGTTTATGTTTAGTACCGTCTTGTTCGGAAATTCTTCCC
TGTTTTATTTGAAACCTTTTCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCTTGAAATCTCTTATTACTGTT
CCTTACTTTTTGAATAATACTTTCCCCCAGACTGACAAATTCCAATAAAA
GATAACTCACTTATCTCTTTCTGGTTATTTCTAAATAAGTCACAGAGAAA
AATTTAAAAAGTTTAAATTCTCTCATACACGGAAACTACTTTTGATAAGG
AATGATTTATGCTGTCCTGGGGGAGGGGTGGCTTATTGTGTCAGGATACT
GGAAATGCTCTTGTGGCGCTTTTTTAACCCAATGGTACTTTTCTTTCTCT
AGGAATTCACTTCTCCTTCCTTATCCTCAGTCTCATACTTGGCAATCTTC
ACACTATATTTTTGAAACTATGTACCATTTCCACTTGTCTGAAGGATTAG
ATAAGAAACTTGAATCACAGAGCCACTTGTCATAGGTGATACTACTAACA
ACCCAGGCTGAATACTGTAAAATTGCTTTGTTTAAACAGAAGTTCAGAAA
AAATTTTCAAGCAGTTTAAATACTTTTTAAATAGTATTATTTTTATTCAA
TGGATGTACATAAAGTGAGACATGCCTTATACCCTGTGATACTAAGTGAT
TAATGATAGGGCTTTTCATAATGACAGGAAGAGCCTAACCCGTGTTTGAA
ATACAGTAACATGCCCTGCCCGGGTTTTATAAGCTTCCATGGTTTTAATT
TTCTCTCTTAATGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_m04.b1 MSMg01no374_m04.b1 CHROMAT_FILE:
MSMg01no374_m04.b1 PHD_FILE: MSMg01no374_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:06 2005
         (426 letters)



>mm_chr1_130240172_130240997
          Length = 826

 Score =  743 bits (384), Expect = 0.0
 Identities = 411/420 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattagtattttcttcagttttattaatctacattgaattgagactcatcattag 64
           |||||||||||||  || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 624 gaattcattagtaagttattcagttttattaatctacattgaattaagactcatcattag 565

                                                                       
Query: 65  ttggtgctttcagagcatccctagaatgttgattactgtgactagatcatcccagtttgt 124
           ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 564 ttggtgctttcggagcatccctagaatgttgattactgtgactagaccatcccagtttgt 505

                                                                       
Query: 125 cgctttgctaacatctctaaacagatctatccatgaatacatagtatatcacctatatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cgctttgctaacatctctaaacagatctatccatgaatacatagtatatcacctatatat 445

                                                                       
Query: 185 ttggcaaagattcattccttgtgggtattcaagcttatattcattgtggtactccttcgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttggcaaagattcattccttgtgggtattcaagcttatattcattgtggtactccttcgc 385

                                                                       
Query: 245 tctttacttttccagtcagtccgtatttacggttggtcgggaactgtctctgccacccac 304
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 384 tctttacttttccagtcagtccgtatttacggttggccgggaactgtctctgccacccac 325

                                                                       
Query: 305 agtctttgatcacagatgtgcaccattgcacacagcccagtcttctcatgctgagggtaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtctttgatcacagatgtgcaccattgcacacagcccagtcttctcatgctgagggtaa 265

                                                                       
Query: 365 atttcgcagtcccgtttcctgaatattatttgttttgcttgtcgatgttatttgtttgtt 424
           |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 264 atttcgcagtcccgttacctgaatattatttgttttgcttgtcggtgttatttgtttgtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no374_m04.g1 MSMg01no374_m04.g1 CHROMAT_FILE:
MSMg01no374_m04.g1 PHD_FILE: MSMg01no374_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:06 2005
         (528 letters)



>mm_chr1_130100598_130101525
          Length = 928

 Score =  998 bits (516), Expect = 0.0
 Identities = 525/528 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcttgaaatctcttattactgttccttactttttgaataatactttcccccagactgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 tgcttgaaatctcttattactgttccttactttttgaataatactttcccccagattgac 260

                                                                       
Query: 61  aaattccaataaaagataactcacttatctctttctggttatttctaaataagtcacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaattccaataaaagataactcacttatctctttctggttatttctaaataagtcacaga 320

                                                                       
Query: 121 gaaaaatttaaaaagtttaaattctctcatacacggaaactacttttgataaggaatgat 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaaattttaaaagtttaaattctctcatacacggaaactacttttgataaggaatgat 380

                                                                       
Query: 181 ttatgctgtcctgggggaggggtggcttattgtgtcaggatactggaaatgctcttgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatgctgtcctgggggaggggtggcttattgtgtcaggatactggaaatgctcttgtgg 440

                                                                       
Query: 241 cgcttttttaacccaatggtacttttctttctctaggaattcacttctccttccttatcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgcttttttaacccaatggtacttttctttctctaggaattcacttctccttccttatcc 500

                                                                       
Query: 301 tcagtctcatacttggcaatcttcacactatatttttgaaactatgtaccatttccactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagtctcatacttggcaatcttcacactatatttttgaaactatgtaccatttccactt 560

                                                                       
Query: 361 gtctgaaggattagataagaaacttgaatcacagagccacttgtcataggtgatactact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtctgaaggattagataagaaacttgaatcacagagccacttgtcataggtgatactact 620

                                                                       
Query: 421 aacaacccaggctgaatactgtaaaattgctttgtttaaacagaagttcagaaaaaattt 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacaacccaggctgaatgctgtaaaattgctttgtttaaacagaagttcagaaaaaattt 680

                                                           
Query: 481 tcaagcagtttaaatactttttaaatagtattatttttattcaatgga 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaagcagtttaaatactttttaaatagtattatttttattcaatgga 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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