BAC Information

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BAC

Clone NameMSMg01-374O01
Chromosome1 (Build37)
Map Location 128,629,529 - 128,630,002
singlet/doubletsinglet
Overlap geneE030049G20Rik
Upstream geneLypd1
Downstream geneLOC383559, Mgat5, LOC667090, Tmem163, Acmsd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374O01.T7 (MSMg01no374_o01.b1)MSMg01-374O01.TJ (MSMg01no374_o01.g1)
ACCAG480566AG480567
length793777
length of high quality
(start - end)
479 (46 - 524)442 (77 - 518)
definitionCHROMAT_FILE: MSMg01no374_o01.b1 PHD_FILE: MSMg01no374_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:15 2005CHROMAT_FILE: MSMg01no374_o01.g1 PHD_FILE: MSMg01no374_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAATCTCTTCGGTGGGAGTCCTTTGCAGGTTTAGTAGGAGATTT
CTCAGGTTATACAGATGGAGCTCACTGTTCCGCTATTGGGAGCTGCTATC
TGGTGGCAGAATGTTCTGGATCGAAATGCTCCTCAGTACTTCTCCACATT
CATCCTCCTGAAGTTGGCCAGTGGCACTTCCCTTTGCACCTGATTTGTCT
CCAGACCTTTGTTCTCCCCATCCTAGGACCAGGCTTTCTTCCCTCCCTCA
CCACAGTCAGGTGTGTCACATCCCATGGATAAGTCAGGTGTCCCGTGTCC
CATGGTTAAGTGTGCTCATTGGTTTTACCCCTCAGCCTTTGTGGGTCACA
GGGCAGACTCCTATGAACTTAAGTCCTGCTGTGTGTGTTCCTGCCTTTAG
TAGATTGTGTATTGAGTACACGAATGGATATTGTTTCCCAAGTTCCTCCA
TTCCCACCAAACTCCTCCGTCTGTATATTTCTCATGACACTATCTTGGAT
TCATTTCTAGTTCTCCTCCTTGCTCAAGCCATGTATCCCGCCCACTTTCT
GTCATGATTCTGCAATCTTTTTATCCATCTTGTCTTTTGTCTGATGTTTG
CTGTTATTTCATAGAATTGATCGCTTTATCGTTGAATATCCTATATCTTT
TCCGAATATTTATATGTTTATATCCCCCCCTTTATATTCTTATCTACTTG
TCCTTTCTCTCTTTCCAATACTTTGCCCGCCTCCTTTTTGGGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAG
ATCAGTCTGGCGGTTCCTCAGAAAACTGGTATATAGTACTACCGAAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCA
GAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAG
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTGTCCAAATGGATGGACCTGGAGGGTATCATCCTGA
GTGAGGTAACACATTCATAAAGGAACTCACACAATATGAACTCACTTGAT
AAGTGCAATTTATCCCCAAACCTAATATCCCCCATATATCACATATCATT
TCCTAAACCCCTGAAATTCTATGATAACCGAGACTGAAGTGCGTACCCTA
TGTCCCTCCCTATAATTGGGATTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_o01.b1 MSMg01no374_o01.b1 CHROMAT_FILE:
MSMg01no374_o01.b1 PHD_FILE: MSMg01no374_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:15 2005
         (479 letters)



>mm_chr1_128629325_128630203
          Length = 879

 Score =  882 bits (456), Expect = 0.0
 Identities = 470/476 (98%), Gaps = 4/476 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagaatctcttc--ggtgggagtcctttgcaggtttagtaggagatttctcaggt 62
           ||||||||||||||  |  ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 678 gaattcagaatctc--ccaggtgggagtcctttgcaggtttagtaggagattcctcaggt 621

                                                                       
Query: 63  tatacagatggagctcactgttccgctattgggagctgctatctggtggcagaatgttct 122
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 620 tatacagatggagctcactgttctgctattgggagctgctatctggtggcagaatgttct 561

                                                                       
Query: 123 ggatcgaaatgctcctcagtacttctccacattcatcctcctgaagttggccagtggcac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggatcgaaatgctcctcagtacttctccacattcatcctcctgaagttggccagtggcac 501

                                                                       
Query: 183 ttccctttgcacctgatttgtctccagacctttgttctccccatcctaggaccaggcttt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttccctttgcacctgatttgtctccagacctttgttctccccatcctaggaccaggcttt 441

                                                                       
Query: 243 cttccctccctcaccacagtcaggtgtgtcacatcccatggataagtcaggtgtcccgtg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cttccctccctcaccacagtcaggtgtgtcacatcccatggataagtcaggtgtcccgtg 381

                                                                       
Query: 303 tcccatggttaagtgtgctcattggttttacccctcagcctttgtgggtcacagggcaga 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcccatggttaagtgtgctcattggttttacccctcagcctttgtgggtcacagggcaga 321

                                                                       
Query: 363 ctcctatgaacttaagtcctgctgtgtgtgttcctgcctttagtagattgtgtattgagt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctcctatgaacttaagtcctgctgtgtgtgttcctgcctttagtagattgtgtattgagt 261

                                                                   
Query: 423 acacgaatggatattgtttcccaagttcctccattcccaccaaactcctccgtctg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acacgaatggatattgtttcccaagttcctccattcccaccaaactcctccgtctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)