Query= MSMg01no375_c18.b1 MSMg01no375_c18.b1 CHROMAT_FILE:
MSMg01no375_c18.b1 PHD_FILE: MSMg01no375_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:40 2005
(521 letters)
>mm_chr1_87988904_87989821
Length = 918
Score = 963 bits (498), Expect = 0.0
Identities = 512/518 (98%), Gaps = 3/518 (0%)
Strand = Plus / Minus
Query: 4 ggaattcactaagttatatgtggaatgaaaactacttgaactggcaacattctcactaaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ggaattcactaagttatatgtggaatgaaaactacttgaactggcaacattctcactaaa 620
Query: 64 ctatgaaatcaaaaagactgtgaaaaagcctgctggaaagcatgggcatcaggctttctg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctatgaaatcaaaaagactgtgaaaaagcctgctggaaagcatgggcatcaggctttctg 560
Query: 124 tgcagacgatctcttgaaatagaccatgttcctgtcagtgggactaaagttaatttcact 183
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgca---gatttcttgaaatagaccatgttcctgtcagtgggactaaagttaatttcact 503
Query: 184 ggctagaaaacgtggtttcttgatatgcctatcttaggatgatcaaatattctcacctga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggctagaaaacgtggtttcttgatatgcctatcttaggatgatcaaatattctcacctga 443
Query: 244 tcttgtctcttacaaacaagaatgccccttggggtagtttcagaaattacacttgactgg 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcttgtctcttacaaacaagaatgccccttggggtagtttcagaaattacacttgactga 383
Query: 304 ttttgaagactatgcatgctgacatagtactgttctatttcattctaaaaaccgaccgct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ttttgaagactatgcatgctgacatagtactgttctatttcattctaaaaaccgaccgct 323
Query: 364 gaattatggacttctgtgtccaatgaataagaatctgaacttgagaccactgacaatggt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaattatggacttctgtgtccaatgaataagaatctgaacttgagaccactgacaatggt 263
Query: 424 catacatataaatgtatatatgatggtcatatatacaatgtacatatcctatacctcttt 483
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 262 catacatataaatgtatatatgatggtcatatatacaatgtacataacctatacctcttt 203
Query: 484 gtggtggtttgaataggtatgctcccacagactcatgt 521
||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gtggtggtttgaataggtatgctcccacagactcatgt 165
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 918
Length adjustment: 10
Effective length of query: 511
Effective length of database: 908
Effective search space: 463988
Effective search space used: 463988
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_c18.g1 MSMg01no375_c18.g1 CHROMAT_FILE:
MSMg01no375_c18.g1 PHD_FILE: MSMg01no375_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:40 2005
(333 letters)
>mm_chr1_87799331_87800063
Length = 733
Score = 621 bits (321), Expect = 0.0
Identities = 330/333 (99%)
Strand = Plus / Plus
Query: 1 agaagagtggtcccctctgaggcatctcattgaccatagtgcttctgtccacaggaggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagagtggtcccctctgaggcatctcattgaccatagtgcttctgtccacaggaggaa 260
Query: 61 cgcccccctcgccaccgctcccggaaaggaggctccgtgggcggcgtgtgctacctgtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgcccccctcgccaccgctcccggaaaggaggctccgtgggcggcgtgtgctacctgtcc 320
Query: 121 atgggcatggttgtattgctcatgggccttgtgtttgcctcggtctacatctacaggtac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgggcatggttgtattgctcatgggccttgtgtttgcctcggtctacatctacaggtac 380
Query: 181 ttcttccttgctcaggtgaggagccaggcagatgggtggggaaggggtggctccgagaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttccttgctcaggtgaggagccaggcagatgggtggggaaggggtggctccgagaca 440
Query: 241 aggggatatgaggtctgctgagggtgtggaagcagtggggagccagagcctgaggccccc 300
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggggagaggaggtctgctgagggtgtggaagcagtggggagccagagcctgaggcccca 500
Query: 301 gtgaagagagacagtaagaattccctaacccag 333
|||||||||||||||||||||||||||||||||
Sbjct: 501 gtgaagagagacagtaagaattccctaacccag 533
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space: 234576
Effective search space used: 234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
