BAC Information

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BAC

Clone NameMSMg01-375D03
Chromosome1 (Build37)
Map Location 153,970,530 - 153,970,831
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668040, LOC676758, EG668050, LOC668055, 3110040M04Rik, LOC100043286, Ivns1abp, 1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3, 1700025G04Rik
Downstream geneLOC668076, 5730449L18Rik, Glt25d2, Rgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375D03.T7 (MSMg01no375_d03.b1)MSMg01-375D03.TJ (MSMg01no375_d03.g1)
ACCAG480809AG480810
length804781
length of high quality
(start - end)
317 (52 - 368)316 (82 - 397)
definitionCHROMAT_FILE: MSMg01no375_d03.b1 PHD_FILE: MSMg01no375_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:42 2005CHROMAT_FILE: MSMg01no375_d03.g1 PHD_FILE: MSMg01no375_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTGACTCTTTTGCCCACTTGGGACTGTTTTCCTCCTAC
TAGGTTGTCTTGTGTAGCCTTCATATGAGAGTTTGTGGCTAGTCTTATTT
TAACTTGTTATGTCATGTTTGGTTGATATTTCTGGGAGGCCTGCTCTGTT
TTTCAAAGAGAAATGGAGGAAGAGTAGATCTGGGGGACAGGGGAGGGACC
AGAAGGAGTGGAGGGAAGGAAAACTGCAGTTGGAATGTAATGTATAAGAG
AAGAATAAAAAGAATAGATAGAAAACGTGGGAACTAAAAGGGGTAGGGGA
AGGGGGGGGAGGGAGCTTTTTCTCTCTCCTCCTTGCTCCCTTCCTGTCTT
TTCCTTCTGTTGTCGTTTTTTTCCCCCCCTCCTCCTTCTGTTCTTCTTCT
TCTTTCCTTCTCTCTTCTCTTTTTTCGCTTTCATCCTTGCCGTCCGTCTT
TTGTTCGTCCTTCTCTTTTTCGCTTTTTTCCTCTTTCTGCTTTCTTTCCT
GCTTCTTTCCTCCTCTTTCTTTTTTCCACTTGCTTCTTTCCTCCCATTAT
GTTTTTTTTTCTCTTCATATTTCTCCTCTTTTTTTTTTTTTCCCCTTTTC
CACTCTCCATTCCACACACCACACCTCCTTCCCTATCATCTTCCTTTTTA
TTATATCCCCTCCCTCCTCCTTATTCTTAACTTCTTATTCCCTTTCTCTT
CTTTTTTTTTTTTTCTCCCCCCTCCTTTTCCTACCCCTTCTCCCTTTATT
TACG
NCCCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTACTAAAAGAAAAAACA
GTCCTAAGAAGAGGTAATACTCTTTATATAAGATATATATAAGATATAAG
ATGTAAAATATAAAAGATATAAGACAATATATAAGACATAGGATATAAGA
GATATAAGATAAGCTATATAAGATATATGGTATCTGACACATGATCTCTA
ATAGTTCTTACCAGCTAATTAATGGGCTATTAGTTAAGAGGAGGTGGAGA
AGGAGGCCAGGAGGATGAGCTGTGAACAATCCTAAGAAGGAAGGATGGGG
AGGAGAGATAAAATTGCTTATTTCGCAGATACTGAAAGACCCACGACGTG
AGGACTCCCCCACATTCTGACTCAGGAGAGACGACACGCCATATCACTCC
GAAGAAACGGTCTTGCTGGAAACTGCAAGAGAACTTTTTATTCANGAGCG
GTCTCGGGCCCCATGGTTTATACGCCATGGCTGGTGTAAAGGCAGCGGGG
CGCCCCGAGTACCTCTGGTTAAGGGGGGCCATCTCACGGGTTTAATCCCC
CCCCTCCGGGATGTGGCGTGGGCGCTCCCCTTTTTACCCCCCGTTTCATT
TCCCCCGTCTTTGCTCCTTCTTCTCTGTTTTCCTTTTCTTCTCTTCTCCC
CATTCTTCCTCTCGTTAAGATTCGGGTTCTTACTTTTCCCTTTATTACGT
TTCACCCCCACTTTCTCTCTCCCTTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_d03.g1 MSMg01no375_d03.g1 CHROMAT_FILE:
MSMg01no375_d03.g1 PHD_FILE: MSMg01no375_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:42 2005
         (316 letters)



>mm_chr1_153970319_153971034
          Length = 716

 Score =  576 bits (298), Expect = e-169
 Identities = 301/302 (99%)
 Strand = Plus / Plus

                                                                       
Query: 12  aaaaaacagtcctaagaagaggtaatactctttatataagatatatataagatataagat 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 aaaaaacagtcctaagaagaggtaatactctttatataagatatatataagatataagat 271

                                                                       
Query: 72  gtaaaatataaaagatataagacaatatataagacataggatataagagatataagataa 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 272 gtaaaatataaaagatataagacaatatataagacataggatataagagatgtaagataa 331

                                                                       
Query: 132 gctatataagatatatggtatctgacacatgatctctaatagttcttaccagctaattaa 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gctatataagatatatggtatctgacacatgatctctaatagttcttaccagctaattaa 391

                                                                       
Query: 192 tgggctattagttaagaggaggtggagaaggaggccaggaggatgagctgtgaacaatcc 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tgggctattagttaagaggaggtggagaaggaggccaggaggatgagctgtgaacaatcc 451

                                                                       
Query: 252 taagaaggaaggatggggaggagagataaaattgcttatttcgcagatactgaaagaccc 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 taagaaggaaggatggggaggagagataaaattgcttatttcgcagatactgaaagaccc 511

             
Query: 312 ac 313
           ||
Sbjct: 512 ac 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)