Query= MSMg01no375_g04.b1 MSMg01no375_g04.b1 CHROMAT_FILE:
MSMg01no375_g04.b1 PHD_FILE: MSMg01no375_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:58 2005
(466 letters)
>mm_chr1_140607888_140608756
Length = 869
Score = 615 bits (318), Expect = e-180
Identities = 335/342 (97%), Gaps = 3/342 (0%)
Strand = Plus / Minus
Query: 128 ggactctaccagatacatctccagtggcattatcatcttctgaactcctgcctatatggt 187
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 869 ggactctaccagatacatctccagtggcattatcatcttctgaactcctgtctatatggt 810
Query: 188 ctattaggttctgcttgtaggaatccagggtttctccagcctactgctctaagcccttac 247
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 809 ctattaggttctgcttgtaggaatccagggtttctccagcctactgatctaagcccttac 750
Query: 248 atgttcccctcatatacagttctaaaggcctacatagaacacagccaggcttatcacagt 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 atgttcccctcatatacagttctaaaggcctacatagaacacagccaggcttatcacagt 690
Query: 308 gaaggacttactgcttagtagagatttcctgtattagctatcttaatcactggactgaca 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gaaggacttactgcttagtagagatttcctgtattagctatcttaatcactggactgaca 630
Query: 368 aaggcaacttagtgagaaggaaggtcaggagcaaaagagggagagga---cgagagagaa 424
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 629 aaggcaacttagtgagaaggaaggtcaggagcaagagagggagaggaggacgagagagaa 570
Query: 425 gctgtattctggctcagagtttgagcgtgttcaccactgcag 466
|||||||||||||||||||||||||| |||||||||||||||
Sbjct: 569 gctgtattctggctcagagtttgagcatgttcaccactgcag 528
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 869
Length adjustment: 10
Effective length of query: 456
Effective length of database: 859
Effective search space: 391704
Effective search space used: 391704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_g04.g1 MSMg01no375_g04.g1 CHROMAT_FILE:
MSMg01no375_g04.g1 PHD_FILE: MSMg01no375_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:58 2005
(510 letters)
>mm_chr1_140461446_140462355
Length = 910
Score = 857 bits (443), Expect = 0.0
Identities = 485/507 (95%), Gaps = 13/507 (2%)
Strand = Plus / Plus
Query: 4 ggatctgagttcaggtcttcacacttgtgcagccagtgagtcacacacttagccttctta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggatctgagttcaggtcttcacacttgtgcagccagtgagtcacacacttagccttctta 263
Query: 64 ccaactattgtgtcttttcactaatcctgcataattgaagcaaaacacttctaatatgtg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccaactattgtgtcttttcactaatcctgcataattgaagcaaaacacttctaatatgtg 323
Query: 124 aaatatgtttaacattatttgatctagattaaaaatccatgtttctgatatttatgttgt 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaatatgtttaacattatttgatctagattaaaaatccatgtttctgatatttatgttg- 382
Query: 184 ctatacaacatttctaatgcttggctcgatgtctggcataagtaggcagcaaagtggata 243
||||||||||||||| ||||||||||||| |||||||| |||||||||
Sbjct: 383 ------------tctaatgcttggctcaatgtctggcataaataggcagctaagtggata 430
Query: 244 gtaaatgattacatatgtactcatcgtaaagacatcaagtgattactgatactaattaag 303
|| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 431 gtcgatgattacatatgtactcatcgcaaagacatcaagcgattactgatactaattaag 490
Query: 304 cataaagttaatgatgaaaaacatcatcaaattcaactaatttgtcgttaatctttaaac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cataaagttaatgatgaaaaacatcatcaaattcaactaatttgtcgttaatctttaaac 550
Query: 364 caaaaagggaaatactattacgagaagacagtggttaacactgcaaatgatgatcaggaa 423
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 551 caaaaagggaaatactgttacgagaagacagtggttaacactgcaaacgatgatcaggaa 610
Query: 424 taagtaacaaggtttaaatgagagccagagaaggaaaataatacatcaaaatacaaaaca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 taagtaacaaggtttaaatgagagccagagaaggaaaataatacatcaaaatacaaaaca 670
Query: 484 agtgaacaaacaaaagcacagcatatt 510
|||||||||||||||||||||||||||
Sbjct: 671 agtgaacaaacaaaagcacagcatatt 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
