BAC Information

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BAC

Clone NameMSMg01-375G05
Chromosome1 (Build37)
Map Location 193,288,810 - 193,444,924
singlet/doubletdoublet
Overlap geneLOC667044, Dtl, Ints7
Upstream geneLOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501
Downstream geneLpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1, Hhat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375G05.T7 (MSMg01no375_g05.b1)MSMg01-375G05.TJ (MSMg01no375_g05.g1)
ACCAG480954AG480955
length775815
length of high quality
(start - end)		468 (52 - 519)362 (83 - 444)
definitionCHROMAT_FILE: MSMg01no375_g05.b1 PHD_FILE: MSMg01no375_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:58 2005CHROMAT_FILE: MSMg01no375_g05.g1 PHD_FILE: MSMg01no375_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(193,288,810 - 193,289,274)(193,444,563 - 193,444,924)
sequence
NTTTTTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATCAAATGCTTCCATGTTCCTCTCTTGTAGCCTCCAGGC
CCCATTTTGTTAGTGATTGATGCTCACGATTCCCTTTCGATACTGATAAC
TTCCACAGCCCCTTCAAGCTAGGAAAGTATTTGGAAAGTATTTGAGTCTC
CCTTTCAAGCCGATGTGACTTGAAGAAGAATTTGTAGCCGCTTGCTTTCC
AGGACTCCCGACTCTCAGTAAGATAAAGAAGACCCAGGAAGGTTTTCATC
TGTTGAACCTTATGTTTCTTCAGCTTAAAGCAATCTTTCTGTTAATTCTG
GGATTCCATGTGGCTTCCTATGACATAAATTCACGGTTAAAAAAATAAAT
AAACAGCATCAGTAGGAACTAAAGCAGCATGAGGGAGAGTCACAGCACAA
GGCACAGAAGCACTGGCTCCCACACTGTAGAGAGCAGAAGCGCCAGGCTG
GAATGCAGAGGGAAAACACTTAGTCCCAGCAGCAGAGAAAGGTGACAGAA
AGAAGAATGCCGGCTCGTGGGGCTTTAAAAAGGGTCCCTTTGTAGCAAAA
ATAAAAATGAAGGTGGTACACGTTGTAATAATGGAAAAAGGAAAGAAATT
TGTCCCCGCTTTGGTTTTATGGGACCCGGCCTAATATAAAAAAAAAAAAA
ATTTCTTCCTCGGGTTAACCCATGCAACACTCCCGGCTTGGTTTCATTTA
AATGACCGCCCCTTTGGTTCCAAAT

TTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATCACAATTCCCAGCA
ACATCTGAGATCACCCAGCCATAACGGGGGTGTTCTAGACACAGCCCATC
GTTTATCACTCAACAAATATTTATAGGGTGGCTAAGGGCTGCATTAATCA
AAGAAAAGAAAGGAAGAGAATGGAGACCAAGCCTTAACAGTGAGCAGATT
GCAGGCTGAGAGGACAACACTGAAGAAAGCGAGACAGAGGCCACAGCAGT
CCTCCTTCAGCTTCCTACCTAAAACTGTGATGATGAAATGATCGTGTATG
TTCGTGTGTGCACGTGGGTGTGCACATTATATGCTTGCTAGTGTGGGTAT
GTGCATGTGGACATGCAAGTGTGTATGTGTGAGGACATGTGTAGGAGGCC
AGAGGTCAAAGCTGGGTGTTTTTCCTCAACCACCTTCCACCTTTATTTTT
GAGACAGCGAATCATTGAACCTTGGTTCCCATGGTCGGCAATTATTTTGT
CCCGGGGTGTCTGTCTTTGTTTTTTTATCTAATTCCTTTGTCTTTTCTCC
CTTCCTCAACATGCTTTTTTCATTCTTCCTTTTTTTTATGCTCTCCTAAT
ATCTCCATCCTTTTACCCTCTTCTCTACTAACCTCTTTTTTCTCTATCGG
CCTACCTATCACTCTTATCTCCCCCCCTCCCTCTTTCATTCTACTCTTCT
CTTTTGTCTCATCTCCTTCCCTACTCCCCCTTCCCCTATTCTTTCTTTCT
TTCTTTTATCATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_g05.b1 MSMg01no375_g05.b1 CHROMAT_FILE:
MSMg01no375_g05.b1 PHD_FILE: MSMg01no375_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:58 2005
         (468 letters)



>mm_chr1_193288607_193289474
          Length = 868

 Score =  884 bits (457), Expect = 0.0
 Identities = 463/465 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatcaaatgcttccatgttcctctcttgtagcctccaggccccattttgttagt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatcaaatgcttccatgttcctctcttgtagcctccaggccccattttgttagt 263

                                                                       
Query: 64  gattgatgctcacgattccctttcgatactgataacttccacagccccttcaagctagga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gattgatgctcacgattccctttcgatactgataacttccacagccccttcaagctagga 323

                                                                       
Query: 124 aagtatttggaaagtatttgagtctccctttcaagccgatgtgacttgaagaagaatttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagtatttggaaagtatttgagtctccctttcaagccgatgtgacttgaagaagaatttg 383

                                                                       
Query: 184 tagccgcttgctttccaggactcccgactctcagtaagataaagaagacccaggaaggtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tagccgcttgctttccaggactcccgactctcagtaagataaagaagacccaggaaggtt 443

                                                                       
Query: 244 ttcatctgttgaaccttatgtttcttcagcttaaagcaatctttctgttaattctgggat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttcatctgttgaaccttatgtttcttcagcttaaagcaatctttctgttaattctgggat 503

                                                                       
Query: 304 tccatgtggcttcctatgacataaattcacggttaaaaaaataaataaacagcatcagta 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 504 tccatgtggcttcctatgacataaattcacggttaaaaaaataaataaacagcaccagta 563

                                                                       
Query: 364 ggaactaaagcagcatgagggagagtcacagcacaaggcacagaagcactggctcccaca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggaactaaagcagcatgagggagagtcacagcacaaggcacagaagcactggctcccaca 623

                                                        
Query: 424 ctgtagagagcagaagcgccaggctggaatgcagagggaaaacac 468
           |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 624 ctgtagagagcagaagtgccaggctggaatgcagagggaaaacac 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no375_g05.g1 MSMg01no375_g05.g1 CHROMAT_FILE:
MSMg01no375_g05.g1 PHD_FILE: MSMg01no375_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:58 2005
         (362 letters)



>mm_chr1_193444464_193445225
          Length = 762

 Score =  654 bits (338), Expect = 0.0
 Identities = 356/362 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatcacaattcccagcaacatctgagatcacccagccataacgggggtgttctagacac 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 461 tcatcacaattcccagcaacatctgagatcacccagccataacgggagtgttctagacac 402

                                                                       
Query: 61  agcccatcgtttatcactcaacaaatatttatagggtggctaagggctgcattaatcaaa 120
           |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 401 agcccaccgtttatcactcaacaaatatttatagagtggctaagggctgcattaatcaaa 342

                                                                       
Query: 121 gaaaagaaaggaagagaatggagaccaagccttaacagtgagcagattgcaggctgagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gaaaagaaaggaagagaatggagaccaagccttaacagtgagcagattgcaggctgagag 282

                                                                       
Query: 181 gacaacactgaagaaagcgagacagaggccacagcagtcctccttcagcttcctacctaa 240
           ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 281 gacaacactgaagaaagtgagacagaggccacaccagtcctccttcagcttcctacctaa 222

                                                                       
Query: 241 aactgtgatgatgaaatgatcgtgtatgttcgtgtgtgcacgtgggtgtgcacattatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 aactgtgatgatgaaatgatcgtgtatgttcgtgtgtgcacgtgggtgtgcacattatat 162

                                                                       
Query: 301 gcttgctagtgtgggtatgtgcatgtggacatgcaagtgtgtatgtgtgaggacatgtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 161 gcttgctagtgtgggtatgtgcatgtggacatgcaagtgtgtatgtgtgaggacatgagt 102

             
Query: 361 ag 362
           ||
Sbjct: 101 ag 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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