Query= MSMg01no375_h19.b1 MSMg01no375_h19.b1 CHROMAT_FILE:
MSMg01no375_h19.b1 PHD_FILE: MSMg01no375_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:06 2005
(472 letters)
>mm_chr1_9806820_9807691
Length = 872
Score = 874 bits (452), Expect = 0.0
Identities = 464/468 (99%)
Strand = Plus / Plus
Query: 5 gaattcacttttaagtaagatgtgggggcacatgcattatcctagcgcttgggaggctga 64
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gaattcacttttaagtaagatgtgggggcacatgcattatcctagtgcttgggaggctga 264
Query: 65 ggcagaagaattgccagttgggaggacagactgagcttcttggtgagtttgagatgcata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcagaagaattgccagttgggaggacagactgagcttcttggtgagtttgagatgcata 324
Query: 125 gaaagatcttgtctgaaagaaagaatgaaagtacacttagcacataggtgatttcctgag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaagatcttgtctgaaagaaagaatgaaagtacacttagcacataggtgatttcctgag 384
Query: 185 cagaccagagggcaagccatccagggtccttgatcatagctttacatgtgctgtttaaac 244
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 385 cagaccagagggcaagccatccagggtccttgatcgtagctttacatgtgctgtttaaac 444
Query: 245 aattcagacattttattttgtagttgttttgcaattgaatatagagtcttattcagcctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattcagacattttattttgtagttgttttgcaattgaatatagagtcttattcagcctg 504
Query: 305 gtcaagtgctctactgttgcactatcaagctagccactcctctctgcttttaagttttga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtcaagtgctctactgttgcactatcaagctagccactcctctctgcttttaagttttga 564
Query: 365 agcagggtcacacatagcccaggctggcctcagcttcagcctcagtatgtagctgaatat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agcagggtcacacatagcccaggctggcctcagcttcagcctcagtatgtagctgaatat 624
Query: 425 gaccttgaactcctgattttcctgcctctacttaggaagtaccaggac 472
|||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 625 gaccttgaactcctgattttcctgccgctacttgggaagtaccaggac 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_h19.g1 MSMg01no375_h19.g1 CHROMAT_FILE:
MSMg01no375_h19.g1 PHD_FILE: MSMg01no375_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:06 2005
(448 letters)
>mm_chr1_9967655_9968498
Length = 844
Score = 799 bits (413), Expect = 0.0
Identities = 436/445 (97%), Gaps = 4/445 (0%)
Strand = Plus / Minus
Query: 4 gacagcctaagcaacggaatgaggtccagtaaaatcaacaaacaaatattaaaattaaat 63
||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 708 gacagtctaggcaacggaatgaggtccagtaaaatcagcaaacaaatattaaaattaaat 649
Query: 64 ataagtcaaccacatttgacctgcattctgtggccagtccatgtcttgtgcacatgctag 123
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ataagtcaaccacatctgacctgcattctgtggccagtccatgtcttgtgcacatgctag 589
Query: 124 agcctaaatgcttgggttacggtatgcttggctgttttagaaacgacatactagcctctg 183
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 588 agcctaaatgcttgggttacggtatgcttggctg--ttagaaacgacatactagcctctg 531
Query: 184 cctaattaatgcaactaaatacaaataagagtaatgaaacagttatcttggccatatgaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 cctaattaatgcaactaaatacaaataagagtaatgaaacagttatcttggccatatgaa 471
Query: 244 gaagcctaccagacctgacccacagagtctttagtggaataagcctcttgcactcacaat 303
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 470 gaagcctaccagacctgacccac--agtctttagtggaataagcctcttgcactcacaat 413
Query: 304 agtgtgtgagtctcagcatcttgctccacaactaacttttcttggtacctttggatgcag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 agtgtgtgagtctcagcatcttgctccacaactaacttttcttggtacctttggatgcag 353
Query: 364 gggctggaagcattccagggcagctgtgagggattggaccccgggcaggacagtggcaga 423
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gagctggaagcattccagggcagctgtgagggattggaccccgggcaggacagtggcaga 293
Query: 424 gacagcacagaggtctgtcactcta 448
|||||||||||||||||||||||||
Sbjct: 292 gacagcacagaggtctgtcactcta 268
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 844
Length adjustment: 10
Effective length of query: 438
Effective length of database: 834
Effective search space: 365292
Effective search space used: 365292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
