BAC Information

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BAC

Clone NameMSMg01-375I21
Chromosome1 (Build37)
Map Location 45,465,900 - 45,466,340
singlet/doubletsinglet
Overlap geneCol5a2
Upstream geneLOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752, LOC383640, Col3a1
Downstream geneEG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375I21.T7 (MSMg01no375_i21.b1)MSMg01-375I21.TJ (MSMg01no375_i21.g1)
ACCAG481079AG481080
length777765
length of high quality
(start - end)		444 (51 - 494)354 (79 - 432)
definitionCHROMAT_FILE: MSMg01no375_i21.b1 PHD_FILE: MSMg01no375_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:11 2005CHROMAT_FILE: MSMg01no375_i21.g1 PHD_FILE: MSMg01no375_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAGTTTAGCTCCTCTATTTCATCCTGCGTAATATGTATCT
ATATGTATCCAATCTCAGAAGAACTAAGAAAACTTAAATTGCAAGCTTTT
AGAGGTTACTCTATACTTAACAAAACATATTAAATTCCTTCCATCTTTCC
ATTCTTCACTGAAATGCAAATGACTGGATATGAAAGTTGATACATAGATA
GCCAGAAACTATGGTGAGATCTTAGAGAAACTGCTGTAACCAAATACCCA
GGGATTGTATGGTGAGAGACTGAGAATGGAAAGACAGTGAAGTAAATTCT
GAGATTTACACAACTTTCAACATAAGTTTTATTAAGAAGGATGCAACAGC
CAAATGCACAAGGGTACAAGGCAATATCACAAATAATTAGTTGTGTAAGT
CACTATAGACGTTGAACTAATGTCCAACTACAGGCAGAAGGAAGACNAAT
CTTTTCCTGATCATTCNTAGACCCAGACTTAGNATCTTTTTCTTCTTTTT
CTAGCCAGCACTCAGTCTGAGGATGCGAAGTCTCAATAAAAGTGTTAAAG
AAAGTTGAATATTTTTAATTAGGGATGGGGAAAGAGGTTATCAGAATATA
GTTCCCCTTGGACCAAAAAAAAAAATTGAACTTCTTGGGGGGGGGGAGAA
AAAAACAAAAACCGGCTAAGGGGGGGGCCCGGGGTTGAACCCTCTTTCCC
GAAAAAAAAGGAAAAGGGGGTTTATAA

NNTTTCCATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCAGTTTGTGTTTTCTTTAT
TGCTTTTATCTCAATTGTCAGGTCTTGCACAGTTTTCTTCACCCATTTCC
TCCCCTTCCTTGGCTACTTTCTTAAAAAGCATTCTTTAGGTGTCTATTTA
TTTTTTCCAATTTCTTTTTTTGATTTCTTAAAGGGATTTTCCAATTGTCC
CTGTATAAGGACCTCCCTGATATTTATAATGTTGGCTTTAAAATTGTTTT
CTTGTGATGCAGCTGCATTGGCATACTCAGGTCTTGCTGCCCTGGGGTAT
CTGGGCTCTGGTGATGCCATACTGCCCTGGCTGCTGTTGATTGCATTTCA
CACTGGCATTAAGCATTTGTGTTAGGGATGGTTAGAGGTCTCGGTACTGA
TTTCTGAGTTTGTCATTGTTAGATGGATGGTTTATCCCGAGGNTTCGGTT
TCCCCCTTGGTCCTCCTTGGATGGGGATCGGGTTTCCGCAACCCGCTTTA
TAATTGAACATTATGTAGTGTTTTAACAATTATAGCTTGGATTCCGTTCA
AAGTTCATTTTTTTGTACAATAATTTCCCACGTTTCTTATAGTAAACTCC
TACTTCCATCCTGTATATCCCTTTCCCTCTTTCCACACTATTCACCCGAC
TCTTTCCATTATTGTACCTCTTCCTCTCTATATTTTACCCTTATACTCAC
CTTAATACCGTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_i21.b1 MSMg01no375_i21.b1 CHROMAT_FILE:
MSMg01no375_i21.b1 PHD_FILE: MSMg01no375_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:11 2005
         (444 letters)



>mm_chr1_45465697_45466540
          Length = 844

 Score =  837 bits (433), Expect = 0.0
 Identities = 439/441 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaagtttagctcctctatttcatcctgcgtaatatgtatctatatgtatccaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaagtttagctcctctatttcatcctgcgtaatatgtatctatatgtatccaat 263

                                                                       
Query: 64  ctcagaagaactaagaaaacttaaattgcaagcttttagaggttactctatacttaacaa 123
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 ctcagaagaactaagaaaacttaaattgcaagcttttagaggctactctatacttaacaa 323

                                                                       
Query: 124 aacatattaaattccttccatctttccattcttcactgaaatgcaaatgactggatatga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacatattaaattccttccatctttccattcttcactgaaatgcaaatgactggatatga 383

                                                                       
Query: 184 aagttgatacatagatagccagaaactatggtgagatcttagagaaactgctgtaaccaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagttgatacatagatagccagaaactatggtgagatcttagagaaactgctgtaaccaa 443

                                                                       
Query: 244 atacccagggattgtatggtgagagactgagaatggaaagacagtgaagtaaattctgag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atacccagggattgtatggtgagagactgagaatggaaagacagtgaagtaaattctgag 503

                                                                       
Query: 304 atttacacaactttcaacataagttttattaagaaggatgcaacagccaaatgcacaagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atttacacaactttcaacataagttttattaagaaggatgcaacagccaaatgcacaagg 563

                                                                       
Query: 364 gtacaaggcaatatcacaaataattagttgtgtaagtcactatagacgttgaactaatgt 423
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 564 gtacaaggcaatatcacaaataattagttgtgtaactcactatagacgttgaactaatgt 623

                                
Query: 424 ccaactacaggcagaaggaag 444
           |||||||||||||||||||||
Sbjct: 624 ccaactacaggcagaaggaag 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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