Query= MSMg01no375_l08.b1 MSMg01no375_l08.b1 CHROMAT_FILE:
MSMg01no375_l08.b1 PHD_FILE: MSMg01no375_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:23 2005
(357 letters)
>mm_chr1_56952228_56952984
Length = 757
Score = 572 bits (296), Expect = e-168
Identities = 336/356 (94%), Gaps = 16/356 (4%)
Strand = Plus / Minus
Query: 4 ggaattctaaatcctttcactgactcatgagggactagaagtcatcattttttgtttggg 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggaattctaaatcctttgactgactcatgagggactagaagtcatcattttttgtttggg 448
Query: 64 agacaaggtcacatgttgtaaccttgactggcttgggact-tgcttcatagagatcagac 122
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 447 agacaaggtcacatgttgtaaccttgactggcttggga-tgtgcttcatagagatcagac 389
Query: 123 tagctttgaacttacagagttcttacacttctgagttctaagtgctcggtcatgggcacg 182
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 388 tagctttgaacttacagagttcttacacttctgagttctaagtgctcagtcatgggcacg 329
Query: 183 tgccacaaacaatgttcatgtatctcaggctgtcttcaggcaatgtgacagaggtcagcc 242
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tgccacaaacaacgttcatgtatctcaggctgtcttcaggcaatgtgacagaggtcagcc 269
Query: 243 ttcattacagtc-tttttttttatctctgtttgttacatgggtattatatatgtgaacca 301
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 268 ttcattacagtcttttttttttatctctgtttgttacatgggtattacatatgtga---a 212
Query: 302 cccccccaaccccaccccaattattctttttttttttttttgtccccttgtttctt 357
|||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 211 cccc-----ccccaccccaattattc-----ttttttttttgtccccttgtttctt 166
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space: 260304
Effective search space used: 260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no375_l08.g1 MSMg01no375_l08.g1 CHROMAT_FILE:
MSMg01no375_l08.g1 PHD_FILE: MSMg01no375_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:23 2005
(341 letters)
>mm_chr1_56784811_56785551
Length = 741
Score = 629 bits (325), Expect = 0.0
Identities = 337/341 (98%)
Strand = Plus / Plus
Query: 1 tatgtatatctaatgcaacaatattagagggcttcaataaagaaagtcttggaagtaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgtatatctaatgcaacaatattagagggcttcaataaagaaagtcttggaagtaatc 260
Query: 61 atatcactgttaatagtgaagtttttagagcttaagatacaaataaactcgtcacaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 atatcactgttaatagtgaagtttttagagcttaagatacaaataaactagtcacaaaag 320
Query: 121 gctgcatcttggattaatgcatttatatgagaggtcttggtatatctataactcagaagt 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgcatcttggattaatgcgtttatatgagaggtcttggtatatctataactcagaagt 380
Query: 181 aaattatagatagagtaaggaaagagaagtaagaggaggactgggaaggaaggaggaaca 240
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 aaattacagatagagtaaggaaagagaagtaagaggaggactgggaagaaaggaggaaca 440
Query: 241 actatcagtgaatgtggtatgttttcttttggatttggggtgatatatattaatcaaagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actatcagtgaatgtggtatgttttcttttggatttggggtgatatatattaatcaaagt 500
Query: 301 tctttagaggaccataaccaaataaattccatatatatgtt 341
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctttagaggaccataaccaaataaattccatatatatgtt 541
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space: 243024
Effective search space used: 243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
