BAC Information

Click to search

BAC

Clone NameMSMg01-375M08
Chromosome1 (Build37)
Map Location 67,361,257 - 67,361,675
singlet/doubletsinglet
Overlap genenone
Upstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
Downstream geneKif22-ps, Erbb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-375M08.T7 (MSMg01no375_m08.b1)MSMg01-375M08.TJ (MSMg01no375_m08.g1)
ACCAG481245AG481246
length777760
length of high quality
(start - end)
428 (54 - 481)387 (85 - 471)
definitionCHROMAT_FILE: MSMg01no375_m08.b1 PHD_FILE: MSMg01no375_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:28 2005CHROMAT_FILE: MSMg01no375_m08.g1 PHD_FILE: MSMg01no375_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:15:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCTAAATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTCATTTTCTTGTAGTAGTTTTCTAGTAGTTTTCTGG
TTTGAAGAAAATATTTATAGATATTTCTTTAAAATTCCTATGTTGTCTAG
ATGTTATAATCTATCTGCAGTCTCAGAATTCAGCAGACAAACACCAGGGA
ATTATGAGTTGCAGACAGAGCAGACAAGGCTACGTTCTTAGTCTAGTTAC
ATTATTCTGAGCTACAGAGCAAGACTCTGCCTCAAAAACAAAAATCCAGC
AAAATCCAGGCATAGAGTAGATATGGTGAAAAGATGGATAGATGATCCCA
TCACGTGTTAGGAACTATTGGAGTTGATAGCTACCGGAAGGAGGAGAGTC
AGCTTTCTGTAATAACGTAACTCCCCATAGACTGAGGATACAAAAGGGTA
GGCCCTAATCCCAAGACTACCTGGACAATGTACATTTAACATGATTTTTA
TAAAAGGAAAAAAAAGTGGGAGAAATAGGAGAATGGAGAGGGTAGCAACG
AGTTGCGAGATAAATACGTTTACAATATGGTATATTAATCTTTTCCCCCT
ATATTCCCCCCTTGTTCTATTTTTGTGCACCGGTTATTTTTGCTTGCTTA
CTCTGTTTTCTTTGCTCCCTTTTTCCCCTTCTTTCTCTTTCACATTCCTT
TTCTCGCCCTTATTATTTTTCTCCTTTTCCCTTTATCCTCCATATTCATA
TAATTACCTTTTTATTCTCCCACCTTG
CCTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTT
CTCAACAGTCTGTTTTACGGGAACACTTCATTACCATGACCCGCAGTTCT
GGTTCCGGAATGAGGGATCTTCCTTGCACCGGTGATGGTAACCGTCCCAG
GTTTTCTTGTCCCAGGTCTTCTTGTCCTGGGTTTTCTCGTCCCAGGTCTT
CTCGTCCCAGGTCTTCTCGTCCTGGGTCTTCTCGTCCCAGGTCTTCTCGT
CCCAGGTCTTCTCGTCCCGGGTTTTCTCGTCCCAGGTCTTCTCGTCCCAG
GTCTTCTCGTCCCGGGTCTTCTCGTCCCAGGTCTTCTCGTCCCAGGTCTT
CTCGTCCCAGGTCTTCTCGTCCCGTCCCGGGTTTCGGCACCAACTCTTAC
ACGCGTTCTCGCGACCGGCCAGGAAGAACGCAACAAACCGGAATCTTCTG
CGGCAAAACTTTATTGCTTACATCTTTAGGAGCAAGATAGTCAGAGAGCT
CGAGAGCCTTATAAGAATAGTGTAAGAGCCTTATTCAGATATCATATTAC
GACCTCGATTCTCCTTGCTCTATACCTTACTTTTTATGCCTCCAATTTTC
ATTATTAATTTGTACTTTTTAGTATTTTTCTCTACTTTTATTATCACCCC
CTTTCCTTTCCCCTTTTTTACTTTTACCCCCTATTTCACTATATAATCTT
ATCCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no375_m08.b1 MSMg01no375_m08.b1 CHROMAT_FILE:
MSMg01no375_m08.b1 PHD_FILE: MSMg01no375_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:15:28 2005
         (428 letters)



>mm_chr1_67361257_67362084
          Length = 828

 Score =  785 bits (406), Expect = 0.0
 Identities = 416/420 (99%), Gaps = 3/420 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcattttc--ttgtagtagttttctagtagttttctggtttgaagaaaatatt 62
           |||||||||| || |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gaattcttca-ttacaattgtagtagttttctagtagttttctggtttgaagaaaatatt 361

                                                                       
Query: 63  tatagatatttctttaaaattcctatgttgtctagatgttataatctatctgcagtctca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tatagatatttctttaaaattcctatgttgtctagatgttataatctatctgcagtctca 301

                                                                       
Query: 123 gaattcagcagacaaacaccagggaattatgagttgcagacagagcagacaaggctacgt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gaattcagcagacaaacaccagggaattatgagttgcagacagagcagacaaggctacgt 241

                                                                       
Query: 183 tcttagtctagttacattattctgagctacagagcaagactctgcctcaaaaacaaaaat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tcttagtctagttacattattctgagctacagagcaagactctgcctcaaaaacaaaaat 181

                                                                       
Query: 243 ccagcaaaatccaggcatagagtagatatggtgaaaagatggatagatgatcccatcacg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ccagcaaaatccaggcatagagtagatatggtgaaaagatggatagatgatcccatcacg 121

                                                                       
Query: 303 tgttaggaactattggagttgatagctaccggaaggaggagagtcagctttctgtaataa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tgttaggaactattggagttgatagctaccggaaggaggagagtcagctttctgtaataa 61

                                                                       
Query: 363 cgtaactccccatagactgaggatacaaaagggtaggccctaatcccaagactacctgga 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  cgtaactccccatagactgaggatacaaaagggtaggccctaatcccaagactacctgga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)