Query= MSMg01no376_m05.b1 MSMg01no376_m05.b1 CHROMAT_FILE:
MSMg01no376_m05.b1 PHD_FILE: MSMg01no376_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:44 2005
(533 letters)
>mm_chr1_195782360_195783291
Length = 932
Score = 899 bits (465), Expect = 0.0
Identities = 506/531 (95%), Gaps = 21/531 (3%)
Strand = Plus / Plus
Query: 5 gaattcagtggattac--gattgcaggatactgggaatacatatctataaagaagaaaac 62
|||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcagtgga--acaagattgcaggatactgggaatacatatctataaagaagaaa-c 261
Query: 63 aatacaataaaacaatactgaatgtaaaatttgtctgaattaataaaaataaaaatactt 122
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 262 aatacaataaaacaatactgaatgtaaaatttgtctgaattaataaagataaaaatactt 321
Query: 123 ttagcaagctggagagatagatggcttggtggtgaaaggcacttgctactcttccagagg 182
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 322 ttagcaagctggagagatagttggcttggcggtgaaaggcacttgctactcttccagagg 381
Query: 183 tcctgagttccattcccagcacccacataatggctcacaactatctataatgggatctga 242
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 382 tcctgagttccattcccagcacccacatgatggctcacaactatctataatgggatctga 441
Query: 243 tgccctcttctggcatgcaggtgtacatgcagaaagagtactcatacattaaataaataa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgccctcttctggcatgcaggtgtacatgcagaaagagtactcatacattaaataaataa 501
Query: 303 ataaataaataaataaataaataaataaataaatctttaaaaaatacttatagcaacagt 362
|||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 502 ataaataaataaataaat----------------ctttaaaaaatacttatagcaacagt 545
Query: 363 cccgcaaatactgtggtggggaacttctgggaaaatccctgtaggctggagcccacagac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cccgcaaatactgtggtggggaacttctgggaaaatccctgtaggctggagcccacagac 605
Query: 423 tgaaagctatctctgactgcagtgtaggctagaatatggagggtaaatgcaagatgaagt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tgaaagctatctctgactgcagtgtaggctagaatatggagggtaaatgcaagatgaagt 665
Query: 483 aaagatgaagtcaagctgtaggtagaaattcaaattgggtctctgtttcaa 533
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aaagatgaagtcaagctgtaggtagaaattcaaattgggtctctgtttcaa 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 932
Length adjustment: 10
Effective length of query: 523
Effective length of database: 922
Effective search space: 482206
Effective search space used: 482206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_m05.g1 MSMg01no376_m05.g1 CHROMAT_FILE:
MSMg01no376_m05.g1 PHD_FILE: MSMg01no376_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:44 2005
(536 letters)
>mm_chr1_195956633_195957568
Length = 936
Score = 975 bits (504), Expect = 0.0
Identities = 528/536 (98%)
Strand = Plus / Minus
Query: 1 agtcttgacatcagtatttgctacatgcatagtcttacaaaagtcacttactctgaccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 agtcttgacatcagtatttgctacatgcatagtcttacaaaagtcacttactctgaccaa 811
Query: 61 gactcagttttcttgtttgtgaaatgaggaaataatagtggaaccaacttgaaggttcgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gactcagttttcttgtttgtgaaatgaggaaataatagtggaaccaacttgaaggttcgt 751
Query: 121 aatgagatcacatgtacacacactctgaggttgaggagagaggcttgtaaatcacttcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 aatgagatcacatgtacacacactctgaggttgaggagagaggcttgtaaatcacttcac 691
Query: 181 caccagtgttatcttcatcatgggtgccactgtataaaaagtgtcgttggccactaaggg 240
|||||||| ||||||||||||||||||||||||| |||||||| | ||||||||||||||
Sbjct: 690 caccagtggtatcttcatcatgggtgccactgtacaaaaagtgactttggccactaaggg 631
Query: 241 tgtctgtccctttttgggaataggaagatgaataaggcaatcttctgtcattcaggagtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tgtctgtccctttttgggaataggaagatgaataaggcaatcttctgtcattcaggagtc 571
Query: 301 cattaggggagaaacacctatgcatgaatcattgtaatgcaaggaatcaaaacaattgcc 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 cattaggggagagacacctatgcatgaatcattgtaatgcaaggaatcaaaacaattgcc 511
Query: 361 agaaataagactgctgctgcttgctgcatggggagagaaaaagatactagatcacctcta 420
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 510 agaaataagactgctgctgcttgctgcatgaggagagagaaagatactagatcacctcta 451
Query: 421 cctatacaactatagtactatgtcactttgaccactgtaggcagttctggatgacacatc 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cctacacaactatagtactatgtcactttgaccactgtaggcagttctggatgacacatc 391
Query: 481 ttaggatcagggaaggctgagaggagttccagtgttttcatatggggagctaaaga 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttaggatcagggaaggctgagaggagttccagtgttttcatatggggagctaaaga 335
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
