Query= MSMg01no376_m17.b1 MSMg01no376_m17.b1 CHROMAT_FILE:
MSMg01no376_m17.b1 PHD_FILE: MSMg01no376_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:46 2005
(433 letters)
>mm_chr1_59428998_59429828
Length = 831
Score = 818 bits (423), Expect = 0.0
Identities = 427/429 (99%), Gaps = 2/429 (0%)
Strand = Plus / Minus
Query: 5 gaattccaatctttaacaaatttattcatcacaactccagtctctcacacatgcatatac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gaattccaatctttaacaaatttattcatcacaactccagtctctcacacatgcatatac 690
Query: 65 atgcacttgcttgcctgtatgcacactcacacacaatcacacacacagacacttacacca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 atgcacttgcttgcctgtatgcacactcacacacaatcacacacacagacacttacacca 630
Query: 125 ctgcttgtattcagttttgtttggacagtttcctgaagagatccaggtgtccttgcacag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ctgcttgtattcagttttgtttggacagtttcctgaagagatccaggtgtccttgcacag 570
Query: 185 aagggatgtggaagcatgggagcctgggaaaagagatcctctctcaccatctccatcttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aagggatgtggaagcatgggagcctgggaaaagagatcctctctcaccatctccatcttt 510
Query: 245 agctactccagtgttcctctgtaagaacttactttttgtaattctagaaccttctataat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 agctactccagtgttcctctgtaagaacttactttttgtaattctagaaccttctataat 450
Query: 305 attcataaaagtattttttttctgtttctctgtcaaatgaccacttgtttgtcttcccag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 attcataaaagtattttttttctgtttctctgtcaaatgaccacttgtttgtcttcccag 390
Query: 365 aagaaactttctagccttgtcttacctgagaaacagttgttcccccccccctcaccttct 424
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 389 aagaaactttctagccttgtcttacctgagaaacagttgt--ccccccccctcaccttct 332
Query: 425 ccaggacag 433
|||||||||
Sbjct: 331 ccaggacag 323
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 831
Length adjustment: 9
Effective length of query: 424
Effective length of database: 822
Effective search space: 348528
Effective search space used: 348528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_m17.g1 MSMg01no376_m17.g1 CHROMAT_FILE:
MSMg01no376_m17.g1 PHD_FILE: MSMg01no376_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:46 2005
(344 letters)
>mm_chr1_59279107_59279850
Length = 744
Score = 636 bits (329), Expect = 0.0
Identities = 341/345 (98%), Gaps = 1/345 (0%)
Strand = Plus / Plus
Query: 1 ttttcttttcttttc-ttttcttttctttttttttttttttttttgggtttttgaggcag 59
||||||||||||||| |||| |||| ||||||||||||||||||||| ||||||||||||
Sbjct: 200 ttttcttttcttttcttttttttttttttttttttttttttttttggttttttgaggcag 259
Query: 60 ggttactctgtatagccctggctgtcctggaactcactctgtagaccaggctggccccaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggttactctgtatagccctggctgtcctggaactcactctgtagaccaggctggccccaa 319
Query: 120 actcagaaatccacctgcctctgcctcccaaatgctgggactaaaggcgtgcgccaccac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 actcagaaatccacctgcctctgcctcccaaatgctgggactaaaggcgtgcgccaccac 379
Query: 180 tgccctgcgtacacagaattcctaactgctcctaaatctgtgctggtgatgctaactagc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgccctgcgtacacagaattcctaactgctcctaaatctgtgctggtgatgctaactagc 439
Query: 240 tttagtaagatgctcacttcctggtgtgcagggaaatgctaactctgggctatctgtgca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tttagtaagatgctcacttcctggtgtgcagggaaatgctaactctgggctatctgtgca 499
Query: 300 ggccaaggggtgcgcttcagattgcatccttacactatccgcagg 344
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggccaaggggtgcgcttcagattgcatccttacactatccgcagg 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
