BAC Information

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BAC

Clone NameMSMg01-376O01
Chromosome1 (Build37)
Map Location 60,408,530 - 60,409,029
singlet/doubletsinglet
Overlap geneCyp20a1
Upstream geneAls2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1
Downstream geneAbi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376O01.T7 (MSMg01no376_o01.b1)MSMg01-376O01.TJ (MSMg01no376_o01.g1)
ACCAG482090AG482091
length737739
length of high quality
(start - end)		577 (46 - 622)504 (74 - 577)
definitionCHROMAT_FILE: MSMg01no376_o01.b1 PHD_FILE: MSMg01no376_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:52 2005CHROMAT_FILE: MSMg01no376_o01.g1 PHD_FILE: MSMg01no376_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGAAGATTGCCATGGCTACAGCTATAGGATTTGCTATCATGGGA
TTCATTGGCTTCTTCGTGAAACTGATCCATATACCCATTAATAACATTAT
TGTGGGTGGCTGAGTCCTTCTCATCACGGGACGAGTGAGCCAGAGGGGGG
GGGACAGGGGCATGAAGTAAAGCGTTGCCTGGATGCTGTGTGGTGTTTGT
TTCTTCCTCCTTCCTATGAGGTTTTCTACTTCTCAATTAAAATAATTTCA
AAATAAACACTTTTTCCATAACAACAACAACAACAAAAAAGAATATACTT
TCTTTTAAGAGATAGCATTTTGCTTTTTAAAAACAAAACAAAAAAAGACC
AGGCAAATAAAACCCTTCCTTTTTATCATGTTTATCATTTCCGCTTTTAA
TTTACAGCTGTTGATTCAGTCTTGTCTAGCTGGAACAGAAGTAATGTTCT
AGTAATTTCTTTCCTATTAAACTTCATTTTCCTTCATTTATTATTTATGT
CTTTTCTCTCAGATCATTAACCCTCTGCAGAGACGATTCTGCCTGTCTCT
GGCATGAAGGGCATATGCCTGGCAGCCAGTATTCCAGTAGCCAGTTAGGG
AAAAGAACAGGTTTGGATGTGGGATTGTTTCCCGCTGTGAACCTCATTCG
AATCTTAGATTTTTCACCTCAACCACAGCTGATCTTN

AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGAATGGCCAACTTAGCGTAATCAG
TGCGCTCCACATCCAAGTGAGAGATCTTGCTTCAAAAATCAAGGACAACA
CCAGTGTTGATCTCTGGGCTCTACATGCACGTACACATACACCCACATAC
ATGGACCAGTAACCAAACATGCAGGCATGCACGTGCACACACACAGGATA
TACATGATATGGTTGACTGGTAGTAGTTTAAATTCTCAGAATATCTTTTG
AGAATTTGACAGTGGAAAACTATGAACCATATTCATATTTTGATGAAGAT
GTAGATGTTTTCTTTTGATGTAGAGTCCTTAGAGTCTACTGAATTGTAAA
GTTGTTTAAGGTCCTGGAGATGGCTTGGTTGAACTTGTAGAGCTTTTAAG
ATCTGTGACAGTTTACCACATGCTCCTAAGCCCTTTTGTTGTTGTTGTTC
TTTTCCATGTAGGCTTCCCGGCAAGCTTCAGGAATTCCAGGGCTTACTCC
AACTGAAGAAAAGTAAGGATGTTTGTTTGCTTTTGTTTTATGAAGTAAAG
ACATTTCTTCTTTTTTTGGTATCATAACAAAACTAAAAATTTGTGGCAGG
GATACATTTACACACACTCTTTAATAATTCTCACCTAAAACACAATATTC
ACACACTCACCTTTTATTTTACCCCCTTCCCCTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_o01.g1 MSMg01no376_o01.g1 CHROMAT_FILE:
MSMg01no376_o01.g1 PHD_FILE: MSMg01no376_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:52 2005
         (504 letters)



>mm_chr1_60408328_60409229
          Length = 902

 Score =  920 bits (476), Expect = 0.0
 Identities = 495/502 (98%), Gaps = 2/502 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   tgaatggccaacttagcgtaatcagtgcgctccacatccaagtgagagatcttgcttcaa 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tgaatggccaacttagcgtaatcagtgcgctccacatccaagtgagagatcttgcttcaa 262

                                                                       
Query: 63  aaatcaaggacaacaccagtgttgatctctgggctctacatgcacgtacacatacaccca 122
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 263 aaatcaaggacaacaccagtgttgatctctgggctctacatgcacc--cacatacaccca 320

                                                                       
Query: 123 catacatggaccagtaaccaaacatgcaggcatgcacgtgcacacacacaggatatacat 182
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 catacatggaccagtaaccaaacatgcaggcatgcacgtgcacacacacaggatatacgt 380

                                                                       
Query: 183 gatatggttgactggtagtagtttaaattctcagaatatcttttgagaatttgacagtgg 242
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatatggttaactggtagtagtttaaattctcagaatatcttttgagaatttgacagtgg 440

                                                                       
Query: 243 aaaactatgaaccatattcatattttgatgaagatgtagatgttttcttttgatgtagag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaactatgaaccatattcatattttgatgaagatgtagatgttttcttttgatgtagag 500

                                                                       
Query: 303 tccttagagtctactgaattgtaaagttgtttaaggtcctggagatggcttggttgaact 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 tccttagagtctactgaattgtaaagttgtttaaggtcctggagatggcttggttgagct 560

                                                                       
Query: 363 tgtagagcttttaagatctgtgacagtttaccacatgctcctaagcccttttgttgttgt 422
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtagagctcttaagatctgtgacagtttaccacatgctcctaagcccttttgttgttgt 620

                                                                       
Query: 423 tgttcttttccatgtaggcttcccggcaagcttcaggaattccagggcttactccaactg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgttcttttccatgtaggcttcccggcaagcttcaggaattccagggcttactccaactg 680

                                 
Query: 483 aagaaaagtaaggatgtttgtt 504
           ||||||||||||||||||||||
Sbjct: 681 aagaaaagtaaggatgtttgtt 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 902
Length adjustment: 10
Effective length of query: 494
Effective length of database: 892
Effective search space:   440648
Effective search space used:   440648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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