BAC Information

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BAC

Clone NameMSMg01-377A02
Chromosome1 (Build37)
Map Location 133,784,421 - 133,784,844
singlet/doubletsinglet
Overlap genenone
Upstream geneIl20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1
Downstream geneNucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377A02.T7 (MSMg01no377_a02.b1)MSMg01-377A02.TJ (MSMg01no377_a02.g1)
ACCAG482188AG482189
length774792
length of high quality
(start - end)
428 (50 - 477)208 (80 - 287)
definitionCHROMAT_FILE: MSMg01no377_a02.b1 PHD_FILE: MSMg01no377_a02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:02 2005CHROMAT_FILE: MSMg01no377_a02.g1 PHD_FILE: MSMg01no377_a02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATAATAAATTCTATGTGGATTTTGTAAGGCTCACGTCAAAC
ATAGGGATTAATTTTAGAGAATCATAACAATATCCTTGATTCATGCCTGA
TGACCCAAGTTCCCTGGAATACAACAAGCCTGATATGATGGTGTGTCTGT
AATTCCAGAACTCTAACAGTGAGATAGAAAGTGGAGGAAGAGGATGCTGG
AAGTTCCCAGGCCTCTTAGCCTAGTATATGCAGTGCAGCAGAAACCAGAG
ACCCAGTCCCTCGAGGTGAGAATGTATAAATAACCCGAAGAGTTGTTCTC
TGACCTCCATATGTGTGCCATGGTACAACTTACACTCACACACAGAAAAA
TCATACGCAAGGTCATGTGCAAATTCAGGGATGGTAACGGTCATTCTAAT
TTCCAACATTTGCTGGTAGGAGCTAATGGTAACTGGGGTGTGACTATTAA
TCATATATTCTCTTTGTGCGTGCGTGCGTGCAATTGCCAATTTTACCTCT
CCCGCTCTCTTTGGCTTCACTTCTCTTGTCCTACTAACCTACCACCTTTT
TTCATTTTCACATTTTGGTTCTTCTTTCTCCCCCCCCATTATATTTCTTT
TTCTTTCCTTTCCCTTCCTTTCTTCTTTCCCCCCCTGTCCTTTTTCTCCC
TTTTTTTCCCCCCCCCCCTTTCCCTCCTCTTTTTCCTTTTCCTCTCCCTT
TTTCCCCCCCTCCCCCCCCCTCCA
NTCCCAGATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACGGGGGATTGCTGGAGATTG
CTGGGGATGTAGTAGGGCAGAGTGCTAGCCTAGCACACACAAAGCCTTAG
GTTCAGTCCTCAGCATTGTTTACACCAAGTTTGGTGGCGCATGCCTGCAA
CTCTAGTGTTCAGGAGGTGGAAGCCAGAAGGTCAGAAGTTCAAAGTCATT
CTCTGTTACCTGTTGGGGAGAAGTGGGAGGGGGAGATAAACACAATCTAC
AAGGATTGCCTTCTCATATCCCATTCGAGAAAGGATTTCCGTTTCCTAAC
GAATGACTCCACCTATTTCTGTTTTTCCTATTCCCCTTTCCACGCTTTAC
TCTTTAAGTTTCTTGCACCCTAACCCCCACAAAAGCCGTTATTGTTTCAA
CCCCTATTCCCTTACTTTTTCTTTTCTCTTACAACCCCTTATTCTCCCTC
CCCCCCCACACGAACTCTTTTTTCTTTCTCCACCCCTCTCCATTTATTCC
TCCCCCCAAACCTTTTTTCTGTTTACTTCTATTCCCACCACCATTTCCCC
TCTTTAATCACTCGTCCTGTCTTTTCCCGATATATTTCCTTTCATTTTCC
CCCCCCCCCCCTCCCTTTTCTCCATACATTATCTATTTTTCTGCCCAACA
TCTTTTCCCCTTCCCTTCCCCCCTTTTTTATCCTTTCTTTCTCCCCTCTC
TCTTTCTATTTCCTTTTTATCCCTAATTTCATCCCCTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_a02.b1 MSMg01no377_a02.b1 CHROMAT_FILE:
MSMg01no377_a02.b1 PHD_FILE: MSMg01no377_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:02 2005
         (428 letters)



>mm_chr1_133784217_133785044
          Length = 828

 Score =  797 bits (412), Expect = 0.0
 Identities = 421/424 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcataataaattctatgtggattttgtaaggctcacgtcaaacatagggattaatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcataataaattctatgtggattttgtaaggctcacgtcaaacatagggattaatt 264

                                                                       
Query: 65  ttagagaatcataacaatatccttgattcatgcctgatgacccaagttccctggaataca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttagagaatcataacaatatccttgattcatgcctgatgacccaagttccctggaataca 324

                                                                       
Query: 125 acaagcctgatatgatggtgtgtctgtaattccagaactctaacagtgagatagaaagtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaagcctgatatgatggtgtgtctgtaattccagaactctaacagtgagatagaaagtg 384

                                                                       
Query: 185 gaggaagaggatgctggaagttcccaggcctcttagcctagtatatgcagtgcagcagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 gaggaagaggatgctggaagttcccaggcctcttagcctagtatatgcagtgcagtagaa 444

                                                                       
Query: 245 accagagacccagtccctcgaggtgagaatgtataaataacccgaagagttgttctctga 304
           ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 445 accagagacccagtccctcgaggtgagaatggagaaataacccgaagagttgttctctga 504

                                                                       
Query: 305 cctccatatgtgtgccatggtacaacttacactcacacacagaaaaatcatacgcaaggt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctccatatgtgtgccatggtacaacttacactcacacacagaaaaatcatacgcaaggt 564

                                                                       
Query: 365 catgtgcaaattcagggatggtaacggtcattctaatttccaacatttgctggtaggagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catgtgcaaattcagggatggtaacggtcattctaatttccaacatttgctggtaggagc 624

               
Query: 425 taat 428
           ||||
Sbjct: 625 taat 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)