BAC Information

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BAC

Clone NameMSMg01-377J05
Chromosome1 (Build37)
Map Location 39,324,351 - 39,324,753
singlet/doubletsinglet
Overlap geneNpas2
Upstream geneAff3, Lonrf2, Chst10, EG625775, Nms, Pdcl3
Downstream geneLOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2, Il1r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377J05.T7 (MSMg01no377_j05.b1)MSMg01-377J05.TJ (MSMg01no377_j05.g1)
ACCAG482624AG482625
length757762
length of high quality
(start - end)
487 (51 - 537)403 (79 - 481)
definitionCHROMAT_FILE: MSMg01no377_j05.b1 PHD_FILE: MSMg01no377_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:48 2005CHROMAT_FILE: MSMg01no377_j05.g1 PHD_FILE: MSMg01no377_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAACAATTCACTTAAAGAAATACAGGAGAACACTGCTAAAG
AGTTACAAGTCCTTAAAGAAAAACAGGAAAACACTGCTAAAGAGTTACAA
GTCCTTAAAGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTAT
AGAAAAACAGGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCA
TACTAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAG
GCGACGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATGC
CAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAG
AAGACTCCATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGC
AAAAAGATCCTAACTCANAACATCCAGGAAATCCAGGACACAATGAGAAG
ACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCT
AAGGACCAGCATACATCTTCAACAAATTATTGAAGAAAACTTCCCAATCT
AAAGAAAGAGATGCCCATGAACATTAAAGAAACCTACAGAATCCCAATAG
ACTGGACCCGAAAGAAATCCTCCCGAACCTAATAATCCAAAACCCAATGG
CTTTTAATATAAAAACTCAAACCGTAAGGGTAAAGTCCCGGATATTAATG
GGCTTCG
NNNTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACCGTGACTTCTCTGCAGGTTT
GGCTGGCAATCCGGAGTGGCTTTGGGGCCATTTCTTCCCTCCTGAGATGG
TACAGGGACATTTTTCCTCTTAACTACCATTTTCAGAAATATCGTCTGGG
TCCCAATGGGAAGCTGGCCTAATTTCATAGTGACTCTTAGTTAACACTCA
CACAGGCCTCATTTAACTTGGGTCTGGTCCTTAGCAGCTTGTCACTAAAA
TGCTGAAGGGATGGATGGCCTTGCCCAAAGAAAGATGCTCTGTTCAAGAA
GGTGGACTTCTGGCCACCCTTGATTAGTTGGCCACTTATTGAGTTCACTG
AGCTTGCTTTTAAATAAATTATTCTTTACCTCAGATGCCCCCAGAGAGAT
TCTGGGTTTCCCTGAGCCAAGACAGCCCCAGGTTTCCAAACTTTACAGGC
ACACATTTTCTGATGACAGTCCTCTTATTAAAAAACAACAGAAACCAGCA
AGGTAGGAAATGAAAAACCCCAAAGGAGGGAGGCCCCTTCCCCCCTTGGT
TGGTAAGGGGGCTCGGGAAAAATTAACACTCCGCCCGCATAGACCGCTCC
CCTTTCCTTTTTGGTTTGAGGGCAAACTCACTTCCTCGAATCTATTGGGC
GATTAACATTAACCCCCGTTTTGGCCCCCCTCCCTCCTTTTAATGTATAC
TGTATCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_j05.g1 MSMg01no377_j05.g1 CHROMAT_FILE:
MSMg01no377_j05.g1 PHD_FILE: MSMg01no377_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:48 2005
         (403 letters)



>mm_chr1_39324151_39324953
          Length = 803

 Score =  756 bits (391), Expect = 0.0
 Identities = 400/403 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accgtgacttctctgcaggtttggctggcaatccggagtggctttggggccatttcttcc 60
           ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 603 accgtgacttctctgcagggttggctggcaatccggagtggcttcggggccatttcttcc 544

                                                                       
Query: 61  ctcctgagatggtacagggacatttttcctcttaactaccattttcagaaatatcgtctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ctcctgagatggtacagggacatttttcctcttaactaccattttcagaaatatcgtctg 484

                                                                       
Query: 121 ggtcccaatgggaagctggcctaatttcatagtgactcttagttaacactcacacaggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ggtcccaatgggaagctggcctaatttcatagtgactcttagttaacactcacacaggcc 424

                                                                       
Query: 181 tcatttaacttgggtctggtccttagcagcttgtcactaaaatgctgaagggatggatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tcatttaacttgggtctggtccttagcagcttgtcactaaaatgctgaagggatggatgg 364

                                                                       
Query: 241 ccttgcccaaagaaagatgctctgttcaagaaggtggacttctggccacccttgattagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ccttgcccaaagaaagatgctctgttcaagaaggtggacttctggccacccttgattagt 304

                                                                       
Query: 301 tggccacttattgagttcactgagcttgcttttaaataaattattctttacctcagatgc 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 303 tggccacttattgagttcactgagcttgcttttaaataacttattctttacctcagatgc 244

                                                      
Query: 361 ccccagagagattctgggtttccctgagccaagacagccccag 403
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ccccagagagattctgggtttccctgagccaagacagccccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)