NNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGGACTGCCAGGGCTACACAGAGAAACTCTGCCTCGAAAAA
CAAAACAAAACAAGCCGGGCATGGTGGCGCATGCCTTTAATCCAAGCACT
TGGGAGGCAGAGGCAGGCAGATTTCGGAGTTCGAGGCCAGCCTGGTCTAC
AAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAA
AAAACAAAAAAACCCAAAAAACAAAACAAAACAAAAGTTATAAGCTATGT
CAAAAGAGAAAACTCTAATACAAAAGTCGAATGACAGTTTTAGAAATGTT
CATAGTGTCTAGAGCATAATAAATAAACCTTTAGAATTGCTGAATATAAG
TAGGCAGTGGTGGTACACGCCTTTAATCTCAGCACTCAGAAGGCAGAGGC
AGGTGGGTATCTGAGTTCGAGGCCAGCCTGGCTTTACATTGTGAATCCCA
GAATGTCCAGAACTACACAGAGAAACCCTGTCTCACAAAACAAACTAAGA
AAGAAAAAAATTAATGTACATACTATACATGTCTTTTCAAATAATTATTG
AGAAATGGATTAAGAAAAATTGGTTACTTTCCCCGAAAACAAATTCTGGT
TAATTCTCATCCTTACCCCAAGAATCCACTCCCACTAGGATATACCAGAC
CAAATCTAAATCCGCCTCTTTATATTCCCTACTAAACCCCGCCTTGCTTT
TGTCCCCTATTT

NNGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTAGAAAGCTCCACAGAAG
GAGAAGCCCTTGAGTGGCATCTTGAACAACACAGACAGCTCAGACCCTTT
CCTGAATTAGAAGTGAGCTCATGGGATTAAGTCTGCAAGTCCCAGAAAAT
TAAAACGTATGACCACACTGACAAATGCCATTACACCAGCAAGAAAACAA
GCAAGATGTGTCCAGAGCTGCAGTCTTTAAAACCTTTAAAGTTTGTTTGT
TTGTTTGTTTGTTTGTTTGTTTTAACGATATCAAGTAGTTGAAATAAAGC
TACAATATAGGCTGGCTACAAAGCCTACAAAAACCCTCTATAGCTGCTTG
GGCTGAAATCAGACTATCATGATACATCTGTGTAATGCTTTGCGGTAAAA
CCATTCACTCAGATAGCTAAGGACATTTTCTCATAAGCATACTTTAACAA
GACCAAGGAGAAAGCAGACAGACGCCTGCCCTTGTTGTCCACCACTGTTC
CACGGTCGGCTCTGTTCTGTGCTACTGGGAGGAAGCCCAAAAAAAAACCA
GGTTGAGGGCCTAAAAAAATAAGGTTCAAAAAGATGGTTTCCTTGTCACG
TGAAGGCGAGAAATGTTTTTATTTTTTGTAAAGAAAAATTGGTGCCTTTA
TACCCCCCGCCCACCCCCATTTATATCCATTTGCCTGGTCCCTTACCTTT
C

Query= MSMg01no377_j08.b1 MSMg01no377_j08.b1 CHROMAT_FILE:
MSMg01no377_j08.b1 PHD_FILE: MSMg01no377_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:49 2005
         (464 letters)



>mm_chr1_157291924_157292787
          Length = 864

 Score =  874 bits (452), Expect = 0.0
 Identities = 461/464 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggctacacagagaaactctgcctcgaaaaacaaaacaaaacaagccgggcatggtggcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggctacacagagaaactctgcctcgaaaaacaaaacaaaacaagccgggcatggtggcg 260

                                                                       
Query: 61  catgcctttaatccaagcacttgggaggcagaggcaggcagatttcggagttcgaggcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgcctttaatccaagcacttgggaggcagaggcaggcagatttcggagttcgaggcca 320

                                                                       
Query: 121 gcctggtctacaaagtgagttccaggacagccagggctatacagagaaaccctgtctcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctggtctacaaagtgagttccaggacagccagggctatacagagaaaccctgtctcaa 380

                                                                       
Query: 181 aaaaacaaaaaaacccaaaaaacaaaacaaaacaaaagttataagctatgtcaaaagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaacaaaaaaacccaaaaaacaaaacaaaacaaaagttataagctatgtcaaaagaga 440

                                                                       
Query: 241 aaactctaatacaaaagtcgaatgacagttttagaaatgttcatagtgtctagagcataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaactctaatacaaaagtcgaatgacagttttagaaatgttcatagtgtctagagcataa 500

                                                                       
Query: 301 taaataaacctttagaattgctgaatataagtaggcagtggtggtacacgcctttaatct 360
           ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 taaataaacctttagaactgctgaatataagcaggcagtggtggtacacgcctttaatct 560

                                                                       
Query: 361 cagcactcagaaggcagaggcaggtgggtatctgagttcgaggccagcctggctttacat 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 cagcactcagaaggcagaggcaggtgggtatctgagttcgaggccagcctggttttacat 620

                                                       
Query: 421 tgtgaatcccagaatgtccagaactacacagagaaaccctgtct 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgaatcccagaatgtccagaactacacagagaaaccctgtct 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no377_j08.g1 MSMg01no377_j08.g1 CHROMAT_FILE:
MSMg01no377_j08.g1 PHD_FILE: MSMg01no377_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:49 2005
         (418 letters)



>mm_chr1_157493194_157494011
          Length = 818

 Score =  795 bits (411), Expect = 0.0
 Identities = 411/411 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattagaaagctccacagaaggagaagcccttgagtggcatcttgaacaacacagacagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 cattagaaagctccacagaaggagaagcccttgagtggcatcttgaacaacacagacagc 352

                                                                       
Query: 61  tcagaccctttcctgaattagaagtgagctcatgggattaagtctgcaagtcccagaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tcagaccctttcctgaattagaagtgagctcatgggattaagtctgcaagtcccagaaaa 292

                                                                       
Query: 121 ttaaaacgtatgaccacactgacaaatgccattacaccagcaagaaaacaagcaagatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttaaaacgtatgaccacactgacaaatgccattacaccagcaagaaaacaagcaagatgt 232

                                                                       
Query: 181 gtccagagctgcagtctttaaaacctttaaagtttgtttgtttgtttgtttgtttgtttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gtccagagctgcagtctttaaaacctttaaagtttgtttgtttgtttgtttgtttgtttg 172

                                                                       
Query: 241 ttttaacgatatcaagtagttgaaataaagctacaatataggctggctacaaagcctaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 ttttaacgatatcaagtagttgaaataaagctacaatataggctggctacaaagcctaca 112

                                                                       
Query: 301 aaaaccctctatagctgcttgggctgaaatcagactatcatgatacatctgtgtaatgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 aaaaccctctatagctgcttgggctgaaatcagactatcatgatacatctgtgtaatgct 52

                                                              
Query: 361 ttgcggtaaaaccattcactcagatagctaaggacattttctcataagcat 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51  ttgcggtaaaaccattcactcagatagctaaggacattttctcataagcat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)