NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACAGCTCACAATTGATTGTCAACTGAACCAATCTATCTTTGAA
AATATTCATAGTTCATAATTTTATTGAACTGGCATTCATTTATTACTTAG
TTTTGATTATAACTATTGCTACAAAGACAATCTGAGATTATCCTGGATGA
TTCCAAAGAGATATTTCAATGACTGCTAAAGCAAGAAAGTTAACACTACA
GTTTGATGTATGTCAAAGAGTTTGAGCAAATGAGAAGCACCGAACCTAAA
GAAATGTTCAACATCCTTAGTCATCAGGGAAATGCAAATCAAAACAACCC
TGAAATTCCATCTCATACCAGTCAGAATGGCTAAGATTAAAAACTCAGGT
GACAGCAGATGCTGGCAAGGATGTGGAGAAAGAAGAACACTCCTCCATTG
CTGGTGGGACTGCAAGCTGGTACAACCACTCTGGAAATCAGTTTGGCAGT
TTCTCAGAAAATTGAACCTAGTTCTACTGGAAGATCAAGCAATACCACTC
CTGGGCAAATACCCAGAAAGTGCTACAACATGAAATAAGGACATTACTCC
ACTATGTTCATAACAGCCTTATATATAATAGCCCAGAAGTTGGAAAGGAC
CAATATGTCCCTTCACCAAAGGATTGGATACTGAAAATGGGGGACACTTA
CCCCATGGAGAACTAATCCGCTTATTAAAAAAAAGAATTTTTGGAATTCC
CTATCCCAAGG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGAT
AAAAGCAATCTACAGCAAAGCAGTAGCCAACATCAAAGTAAATGGAGAGA
AGCTGGAAGCAATCCCACTAAAATCAGGGACTAAACAAGGCTGCCCACTT
TCTCCCTACCTTTTCAACATAGTACTTGAAGTAATAGCCAGAGCAATTCG
ACAACAAAAGGAGATCAAGGGGATACAAATTGGAAAAGAGGAAGTCAAAA
TATCACTTTTTGCAGATGATATGATATTATATATAAGTGACCCTAAAAAT
TCCACCAGAGAACTCCTAAACCTGATAAACAGCTTCGGTGAAGTAGCTGG
ATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAATA
AACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACA
AATAATATAAAATATCTCGGCGTGACTCTAACTAAGGAAGTGAAAGATCT
GTATGATAAAAACTTCAAATATCTGAAGAAAGAAATTAAGGAAGATCTCA
GAAGATGGAAAGATCTCCCATGCTCATGGAATGGCAGGGGCAACATTGTA
AAAATGGCTATCTTGCCAAAAAGAATCTACAGATTCAATGCGACCCCCTT
CAAATTCCAACTCATTTTTTCAAGAATGGGAGGGAGAAATTGCAAATTTG
GCTGGGAAAA

Query= MSMg01no377_k13.b1 MSMg01no377_k13.b1 CHROMAT_FILE:
MSMg01no377_k13.b1 PHD_FILE: MSMg01no377_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:55 2005
         (507 letters)



>mm_chr1_49285776_49286689
          Length = 914

 Score =  783 bits (405), Expect = 0.0
 Identities = 428/439 (97%), Gaps = 7/439 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacagctcacaattgattgtcaactgaaccaatctatctttgaaaatattcat-- 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 439 gaattcacagctcacaattgattgtcaactgaaccaatctatctttgaaaatattcatag 380

                                                                       
Query: 63  --agttcataattttattg---aactggcattcatttattacttagttttgattataact 117
             |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 379 taagttcataattttattgaacaactggcattcatttattacttagttttgattataact 320

                                                                       
Query: 118 attgctacaaagacaatctgagattatcctggatgattccaaagagatatttcaatgact 177
           |||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 319 attgctgcaaagacagtctgagattagcctggatgattccaaagagatatttcaatgact 260

                                                                       
Query: 178 gctaaagcaagaaagttaacactacagtttgatgtatgtcaaagagtttgagcaaatgag 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 259 gctaaagcaagaaagttaacactacagtttgatgtatgtcaaagagtttgagcaactgag 200

                                                                       
Query: 238 aagcaccgaacctaaagaaatgttcaacatccttagtcatcagggaaatgcaaatcaaaa 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 aagcaccgaacctaaagaaatgttcaacatccttagtcatcagggaaatgcaaatcaaaa 140

                                                                       
Query: 298 caaccctgaaattccatctcataccagtcagaatggctaagattaaaaactcaggtgaca 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 caaccctgaaattccatctcataccagtcagaatggctaagattaaaaactcaggtgaca 80

                                                                       
Query: 358 gcagatgctggcaaggatgtggagaaagaagaacactcctccattgctggtgggactgca 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79  gcagatgctggcaaggatgtggagaaagaagaacactcctccattgctggtgggactgca 20

                              
Query: 418 agctggtacaaccactctg 436
           |||||||||||||||||||
Sbjct: 19  agctggtacaaccactctg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 914
Length adjustment: 10
Effective length of query: 497
Effective length of database: 904
Effective search space:   449288
Effective search space used:   449288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)