BAC Information

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BAC

Clone NameMSMg01-377P10
Chromosome1 (Build37)
Map Location 174,448,315 - 174,623,030
singlet/doubletdoublet
Overlap geneCcdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320
Upstream geneItlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2
Downstream geneCrp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377P10.T7 (MSMg01no377_p10.b1)MSMg01-377P10.TJ (MSMg01no377_p10.g1)
ACCAG482922AG482923
length762757
length of high quality
(start - end)		484 (50 - 533)437 (80 - 516)
definitionCHROMAT_FILE: MSMg01no377_p10.b1 PHD_FILE: MSMg01no377_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:20 2005CHROMAT_FILE: MSMg01no377_p10.g1 PHD_FILE: MSMg01no377_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,448,315 - 174,448,795)(174,622,594 - 174,623,030)
sequence
NNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAGTTTCACGAGATCCAGTGCCACCTTCTGGCCACTGGAGG
TACTGCAGGCACGTGGTGCACAAACATTTATTCAGTCTTTATACTCACCT
ACATAAAAATAATATAAAAGAAAAGTGTTCAAAAAACAGTTAAAGAAAAT
GTTAACATATTCTTGTTATACTTACTTCACAGTGTAGCTGCAAAATGAAG
CCCACTGCCCTGGTGTACTTGTCGAATATCTGCCTCTTCATCCCCAGAAT
GTGTGAATACTTAACCTTACATGGCAAAAGAGGGTTTAGAAGATTAAGAT
TAACTTAGGTATCCTGAGATGGGAGATGATTGTGACTGTTCAGGGTAGGT
GGAGTCCATGGGCTTTGTGAATAGCGGAAGGGGTCATGAGCCAAGGAACA
GGGGCAGCCTTCAAAGCAATAGAAACTCTAGGAGGAACACATGTTTGTTG
ATGCTGCAATTTTAGCTTAGCGAAGTACACCAGACTTTAAAACTAGTAAA
TTTGTGTTTATTTAAGCTCCTAAGTCTTGGTGAATTCTCATAGTAGCATT
GGAAAGCTTAAACACAGGGCTCACATAGGTTCTAAAAGGGAAGACTTACT
GATTTTTACAAAATATAACGGAGAAAACCCACCGGTGACTGATTTTGGCG
GCCCGGGGGTACCTCTGTTTTTTCATTTGTATTTTACACAGCGCTTACAT
ATTGGCGTCACA

NNNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAAATCCAGAAAGCTGGA
AACATACATCAGTGAATAGCCCGAATAGATAGACCATGACCATGCAGGGA
AGGGCTGCTGTGAAAATGTGCTGGTGTACCCTGAAGTAAAGGATACTGGA
AATGGGTGCCAGACCATGAGGCAGCAGTGTCGATTAGGGGTCTTGGAGAC
CACACCTCACTCCCTTACCTAAGCATTAAACAGCAGAGTCCTTGTTCACA
ACCTGGGGCAGAAAGATTCCTTTAGCCCAAGTAGGATATTGCCCTAAGAG
TTTGTAGAGACCCAGAAGGTTTCCAATCCTGATGATAAATTGATATGCCC
TGCCAGTATTTCCTGCTCATTTCTCATAGTTTCTAGAGATAGGCCACAGA
AACAGTAAGGGTATCCATGGGCAGACCGAAAAGCTCAATAGACCTCACTT
AACAAATACAGATATGGCCGGGCATGGTGGCACACGCCTTTAATCCCAGC
ACTCGGAAGGCAAAGGCAGGCGGATTTCTGAATTTCAAGGCTAGCCCGGC
CTTAAAAGGAGATCCAGGAAAGCCCTACTTTTCATAAAAACCCGTTTTCC
CAAACCCCAACCCCCTATTAATAACAACTTTTTTTACATTACCCATTTTG
CTGTTTCATGCCTCCCAACACATTTTTAACTTTATTCTGTGTCCCCTTTT
TTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_p10.b1 MSMg01no377_p10.b1 CHROMAT_FILE:
MSMg01no377_p10.b1 PHD_FILE: MSMg01no377_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:20 2005
         (484 letters)



>mm_chr1_174448112_174448995
          Length = 884

 Score =  915 bits (473), Expect = 0.0
 Identities = 479/481 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagtttcacgagatccagtgccaccttctggccactggaggtactgcaggcac 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagtttcaggagatccagtgccaccttctggccactggaggtactgcaggcac 263

                                                                       
Query: 64  gtggtgcacaaacatttattcagtctttatactcacctacataaaaataatataaaagaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtggtgcacaaacatttattcagtctttatactcacctacataaaaataatataaaagaa 323

                                                                       
Query: 124 aagtgttcaaaaaacagttaaagaaaatgttaacatattcttgttatacttacttcacag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagtgttcaaaaaacagttaaagaaaatgttaacatattcttgttatacttacttcacag 383

                                                                       
Query: 184 tgtagctgcaaaatgaagcccactgccctggtgtacttgtcgaatatctgcctcttcatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtagctgcaaaatgaagcccactgccctggtgtacttgtcgaatatctgcctcttcatc 443

                                                                       
Query: 244 cccagaatgtgtgaatacttaaccttacatggcaaaagagggtttagaagattaagatta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cccagaatgtgtgaatacttaaccttacatggcaaaagagggtttagaagattaagatta 503

                                                                       
Query: 304 acttaggtatcctgagatgggagatgattgtgactgttcagggtaggtggagtccatggg 363
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atttaggtatcctgagatgggagatgattgtgactgttcagggtaggtggagtccatggg 563

                                                                       
Query: 364 ctttgtgaatagcggaaggggtcatgagccaaggaacaggggcagccttcaaagcaatag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctttgtgaatagcggaaggggtcatgagccaaggaacaggggcagccttcaaagcaatag 623

                                                                       
Query: 424 aaactctaggaggaacacatgtttgttgatgctgcaattttagcttagcgaagtacacca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaactctaggaggaacacatgtttgttgatgctgcaattttagcttagcgaagtacacca 683

            
Query: 484 g 484
           |
Sbjct: 684 g 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no377_p10.g1 MSMg01no377_p10.g1 CHROMAT_FILE:
MSMg01no377_p10.g1 PHD_FILE: MSMg01no377_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:20 2005
         (437 letters)



>mm_chr1_174622394_174623230
          Length = 837

 Score =  845 bits (437), Expect = 0.0
 Identities = 437/437 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaaaatccagaaagctggaaacatacatcagtgaatagcccgaatagatagaccatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tctaaaatccagaaagctggaaacatacatcagtgaatagcccgaatagatagaccatga 578

                                                                       
Query: 61  ccatgcagggaagggctgctgtgaaaatgtgctggtgtaccctgaagtaaaggatactgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ccatgcagggaagggctgctgtgaaaatgtgctggtgtaccctgaagtaaaggatactgg 518

                                                                       
Query: 121 aaatgggtgccagaccatgaggcagcagtgtcgattaggggtcttggagaccacacctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aaatgggtgccagaccatgaggcagcagtgtcgattaggggtcttggagaccacacctca 458

                                                                       
Query: 181 ctcccttacctaagcattaaacagcagagtccttgttcacaacctggggcagaaagattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ctcccttacctaagcattaaacagcagagtccttgttcacaacctggggcagaaagattc 398

                                                                       
Query: 241 ctttagcccaagtaggatattgccctaagagtttgtagagacccagaaggtttccaatcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctttagcccaagtaggatattgccctaagagtttgtagagacccagaaggtttccaatcc 338

                                                                       
Query: 301 tgatgataaattgatatgccctgccagtatttcctgctcatttctcatagtttctagaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgatgataaattgatatgccctgccagtatttcctgctcatttctcatagtttctagaga 278

                                                                       
Query: 361 taggccacagaaacagtaagggtatccatgggcagaccgaaaagctcaatagacctcact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 taggccacagaaacagtaagggtatccatgggcagaccgaaaagctcaatagacctcact 218

                            
Query: 421 taacaaatacagatatg 437
           |||||||||||||||||
Sbjct: 217 taacaaatacagatatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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