Query= MSMg01no377_p19.b1 MSMg01no377_p19.b1 CHROMAT_FILE:
MSMg01no377_p19.b1 PHD_FILE: MSMg01no377_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:21 2005
(519 letters)
>mm_chr1_71574761_71575682
Length = 922
Score = 903 bits (467), Expect = 0.0
Identities = 502/515 (97%), Gaps = 6/515 (1%)
Strand = Plus / Plus
Query: 4 ggaattcccgtactcagagaactgggcagaaggattgtgggtcaaggtttattcaggcta 63
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 204 ggaattcccgtactcagagaactgggcagaaggattgtgggtcaaggtttactcaggcta 263
Query: 64 catagaaagatgctgtttcaatttttaaaagagatagtggctgtaatatgcagcattttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catagaaagatgctgtttcaatttttaaaagagatagtggctgtaatatgcagcattttt 323
Query: 124 ttctatcagtgctgaaaaga-aaacatagctgtgtgaagtatgcgtaatgcttcttatgc 182
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 ttctatcagtgctgaaaagacaaa-atagctgtgtgaagtatgcgtaatgcttcttatgc 382
Query: 183 ttatccatgaattactcagacataattacacacatacaaggggaaagataaataaaaact 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttatccatgaattactcagacataattacacacatacaaggggaaagataaataaaaact 442
Query: 243 gaagtattctgaaaacgttatcttttactaagttattgcctgcataattcattgccagaa 302
| |||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 443 ggagtattctgaaaacattatcttttactaggttattgcctgtataattcattgccagaa 502
Query: 303 agcttttacttgtgtaattaaataaagttaagacattatgcccctagttagtattaagtt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agcttttacttgtgtaattaaataaagttaagacattatgcccctagttagtattaagtt 562
Query: 363 catcaatattatttttaaaaataggaagattttttaaaattagaaaaaa---tgggaaat 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 563 catcaatattatttttaaaaataggaagattttttaaaattagaaaaaaaaatgggaaat 622
Query: 420 aggcttgtaattaagaacggaaaataagtggtctctgcctctgtcccattaccaagttag 479
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 623 aggcttgtaattaagaacagaaaataagtggtctctgcctctgccccattaccaagttag 682
Query: 480 acttacgttcaacacgtgttgtgaattaaacaaaa 514
|||||||||||||||||||||||||||||| ||||
Sbjct: 683 acttacgttcaacacgtgttgtgaattaaa-aaaa 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 922
Length adjustment: 10
Effective length of query: 509
Effective length of database: 912
Effective search space: 464208
Effective search space used: 464208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no377_p19.g1 MSMg01no377_p19.g1 CHROMAT_FILE:
MSMg01no377_p19.g1 PHD_FILE: MSMg01no377_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:22 2005
(423 letters)
>mm_chr1_71717914_71718737
Length = 824
Score = 758 bits (392), Expect = 0.0
Identities = 416/424 (98%), Gaps = 1/424 (0%)
Strand = Plus / Minus
Query: 1 actatggagaccaggttagccatgaactcacagagaacagcctgcctctatctcttgaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 actatggagaccaggttagccatgaactcacagagaacagcctgcctctatctcttgaat 663
Query: 61 aatactgtcattaaaggtgtgcaccaccatgctcagctctcctgaatcttttttttttaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 662 aatactgtcattaaaggtgtgcaccaccatgctcagctctcctgaatcttttatttttaa 603
Query: 121 ttgtgtaaattttgagcccaaggaataaaataatctcattcagtacagttggatgacaga 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ttgtgtaaagtttgagcccaaggaataaaataatctcattcagtacagttggatgacaga 543
Query: 181 tatacaaatggaggaacaaagatttagaaataatcaaa-aaacactgacaaatcccagca 239
|||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 542 tatacagatggaggaactaagatttagaaataatcaaataaacactgacaaatcccagca 483
Query: 240 gagcatggaaccagagtgccaattatataggaatgtcaactgatgaactgatatcatcta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gagcatggaaccagagtgccaattatataggaatgtcaactgatgaactgatatcatcta 423
Query: 300 acctgaaccacagagccacttaggatctctgcagtgtcctaatggtgtaggtagaccaga 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 acccgaaccacagagccacttaggatctctgcagtgtcctaatggtgtaggtagaccaga 363
Query: 360 tggagtttcatccagctttgaacaaagcaagtcctttccttaaaagggacttttactata 419
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 362 tggagtttcatccagctttgaccaaagcaagtcctttccttaaaagggacttttactaca 303
Query: 420 atta 423
||||
Sbjct: 302 atta 299
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 824
Length adjustment: 9
Effective length of query: 414
Effective length of database: 815
Effective search space: 337410
Effective search space used: 337410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
