Query= MSMg01no378_f17.b1 MSMg01no378_f17.b1 CHROMAT_FILE:
MSMg01no378_f17.b1 PHD_FILE: MSMg01no378_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:50 2005
(620 letters)
>mm_chr1_169665450_169666466
Length = 1017
Score = 1149 bits (594), Expect = 0.0
Identities = 613/620 (98%), Gaps = 3/620 (0%)
Strand = Plus / Plus
Query: 1 gattttgttcatagtaaccctgactgcttccacttgtggctgataagcctgatgcaagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gattttgttcatagtaaccctgactgcttccacttgtggctgataagcctgatgcaagag 260
Query: 61 gcacacttggctacatggcttgtctgctgggggttcagctcccaccagggcatcttgctt 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 gcacacttggctacatggcttgtctgctgggggttcagctcccaccagggtatcttgctt 320
Query: 121 tccttccagcatctggctttccaaggattgactcaagattctttggagcccagtagcgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccttccagcatctggctttccaaggattgactcaagattctttggagcccagtagcgtt 380
Query: 181 tatatgtgagccaaagaccaacttcccttactgtaagtactgtgaatatgacaatatcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatatgtgagccaaagaccaacttcccttactgtaagtactgtgaatatgacaatatcta 440
Query: 241 tttatcagtatcagactcggactaatagtttcttacagaaactgtcttctccatttattt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 441 tttatcagtatcagactcggactaatagtttcttacagaaactgtcttctccgtgtattt 500
Query: 301 ttcctttcttctattttttttataccctacctcgatgagcaaaccctgtaatctcttctc 360
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 501 ttcctttcttctattttttt-ataccctaccttgatgagcaaaccctgtaatctcttctc 559
Query: 361 tggatgtttgacctgcgcaagtgcctctgccagccagcctttgtggaaccacggagagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tggatgtttgacctgcgcaagtgcctctgccagccagcctttgtggaaccacggagagag 619
Query: 421 gagaaggtatatttgtaagcagggtcagtggtcttcacacacacgttgctcttcagagac 480
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 620 gagaaggtatatttgtaagcagggtcagtggtcttcacacac--gttgctcttcagagac 677
Query: 481 tgtcttcattgacacccaaactctaagagccagttcaaacacagaattttgagtgaggtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tgtcttcattgacacccaaactctaagagccagttcaaacacagaattttgagtgaggtt 737
Query: 541 tgtgttaattcacagtacatgtctgtccttctatctgggagctaggcttctatgagtggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tgtgttaattcacagtacatgtctgtccttctatctgggagctaggcttctatgagtggg 797
Query: 601 attttcctggagctgtgtat 620
||||||||||||||||||||
Sbjct: 798 attttcctggagctgtgtat 817
Score = 89.7 bits (46), Expect = 6e-22
Identities = 63/70 (90%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 172 agtagcgtttatatgtgagccaaagaccaacttcccttactgtaagtactgtgaatatga 231
|||||| || ||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 952 agtagcattcatatgtgagccaaagaccaacttcccttact--aagt--tgtgaatatga 1007
Query: 232 caatatctat 241
|| |||||||
Sbjct: 1008 cagtatctat 1017
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 620
Length of database: 1017
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1007
Effective search space: 614270
Effective search space used: 614270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_f17.g1 MSMg01no378_f17.g1 CHROMAT_FILE:
MSMg01no378_f17.g1 PHD_FILE: MSMg01no378_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:50 2005
(489 letters)
>mm_chr1_169849910_169850796
Length = 887
Score = 880 bits (455), Expect = 0.0
Identities = 480/489 (98%), Gaps = 2/489 (0%)
Strand = Plus / Minus
Query: 1 tctatttcattctatgcagcatcctcttcatgtcctacactgaaagtcacaggacttaga 60
||||||||| |||| |||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 687 tctatttcaatctacgcagcatcctcttcatgtccaacactgaaagccacaggacttaga 628
Query: 61 aattctttgatcagatcttatagaatcctggttgattgttaatctggaagaattggttag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aattctttgatcagatcttatagaatcctggttgattgttaatctggaagaattggttag 568
Query: 121 aggatcactagaaacgagatataagcacccaccaaacatttcacacaaacacagaggagc 180
||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 567 aggatcactagaaac--gatacaagcacccaccaaacatttcacacaaacacacaggagc 510
Query: 181 tacttctgagctatctcttaaaagcactgcgatcttcatcctgttgacaaatggttgcca 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tacttctgagctatctcttaaaagcactgcgatcttcatcctgttgacaaatggttgccg 450
Query: 241 ctgtggaggttgccctggaccttggggatgacagtcacttttcagaacaatgcagcagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ctgtggaggttgccctggaccttggggatgacagtcacttttcagaacaatgcagcagga 390
Query: 301 acctagaggggcctggtcccttggccacctggtggaactgtgctgcgagcctggagagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 acctagaggggcctggtcccttggccacctggtggaactgtgctgcgagcctggagagct 330
Query: 361 ccaggctttttctgtcagtgatgctgactacatcagttgatgagttttatggaggaaata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ccaggctttttctgtcagtgatgctgactacatcagttgatgagttttatggaggaaata 270
Query: 421 gtgttgcccagtttgtactgattaagaggtagtcgattaatatcgtctgcagagtaattc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gtgttgcccagtttgtactgattaagaggtagtcgattaatatcgtctgcagagtaattc 210
Query: 481 agttctgca 489
|||||||||
Sbjct: 209 agttctgca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 887
Length adjustment: 10
Effective length of query: 479
Effective length of database: 877
Effective search space: 420083
Effective search space used: 420083
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
