Query= MSMg01no378_k22.b1 MSMg01no378_k22.b1 CHROMAT_FILE:
MSMg01no378_k22.b1 PHD_FILE: MSMg01no378_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:13 2005
(458 letters)
>mm_chr1_20053945_20054802
Length = 858
Score = 754 bits (390), Expect = 0.0
Identities = 409/416 (98%), Gaps = 3/416 (0%)
Strand = Plus / Minus
Query: 45 tgaaaaaatgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccttgagat 104
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 858 tgaaaaaatgttcaacatccttaatcatcagggaaatacaaatcaaaacaaccttgagat 799
Query: 105 tccacc--tcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgctg 162
|||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 798 tccaccagtcaca-cagtcagaatggctaagatccaaaattcaggtgacagcagatgctg 740
Query: 163 gtgaggatgtggagaaagaggaacactcctccactgctggtaggattgcaagcttgtaca 222
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 739 gtgaggatgtggagaaagaggaacactcctccactgctggtgggattgcaagcttgtaca 680
Query: 223 accactctggaagtcagtctgtattttgttttctctgttttcttggtcatagcaccttca 282
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 679 accactctggaagtcagtctgtattttgttttctctgttttcttggtcatagcgccttca 620
Query: 283 tctcccaggctagaaatatccaagttctgtttctttcctagttcagtttttctcatactt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tctcccaggctagaaatatccaagttctgtttctttcctagttcagtttttctcatactt 560
Query: 343 ccctctttcttgtttgctgaattttataaatttagacttcctcttttgattcttgatgta 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ccctctttcttgtttgctgaattttataaatttagacttcctcttttgattcttgatgta 500
Query: 403 cttatctttttcttcatttcacaatatcttcagtacagccacatttactgtctgaa 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cttatctttttcttcatttcacaatatcttcagtacagccacatttactgtctgaa 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space: 379904
Effective search space used: 379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_k22.g1 MSMg01no378_k22.g1 CHROMAT_FILE:
MSMg01no378_k22.g1 PHD_FILE: MSMg01no378_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:14 2005
(479 letters)
>mm_chr1_19915496_19916374
Length = 879
Score = 888 bits (459), Expect = 0.0
Identities = 474/479 (98%)
Strand = Plus / Plus
Query: 1 aaacttgggttctcatgcttgaacagaaacctctaggacccacagatccagctcctcagc 60
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 aaacttgggttatcatgcttgaacagaaacctctagaacccacagatccagctcctcagc 260
Query: 61 tccaagcaattgttttgagactgtccagagcccatataaaatattgtttatgtgtattaa 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 tccaagcaattgttttgagactgtccagagcccctataaaatattgtttatgtgtattaa 320
Query: 121 ctttccacaagacatcctgtattcaaatgatggctataatacttcattgatttatatcaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ctttccacaagacatcctgtattcaaatgatggctataatacttcattgatttataccaa 380
Query: 181 gttacttagcctccctgtatttcaattctgtcatgtaaagttagggataaaaatagaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttacttagcctccctgtatttcaattctgtcatgtaaagttagggataaaaatagaaac 440
Query: 241 ttgccttgcaaatgtcctctctatagttgagtgagtaaaggtaataaatttcaacccttt 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 ttgccttgcaaatgtcctctctatagttgagtgagttaaggtaataaatttcaacccttt 500
Query: 301 gatgtaggatttaagatgtatcctgaggatcagccccatatcatttccaggtgtcagata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgtaggatttaagatgtatcctgaggatcagccccatatcatttccaggtgtcagata 560
Query: 361 gtgttctggggtcattatctgaccaaagactagcagcacacatttttttttctatatccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgttctggggtcattatctgaccaaagactagcagcacacatttttttttctatatccc 620
Query: 421 aaacatattcatgagtataacttggaattctatgaatgagttttattgaaaataattta 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacatattcatgagtataacttggaattctatgaatgagttttattgaaaataattta 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
