NTTAATTXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCTCAAAGCTGCCCCATAATGATACCTCTCCAGCAAATCCACACCT
GCTAAACTGTCCAAACAGCACTACCAAGTGGGGACTTACTCAAGGCCTAA
AACTAGGGGTCATGTCTCATTCAAACTGCCTTAATCTCATAGTACGTAAA
GTTGGTAAACATGAACAGAAAACCTAGTTAGGCCCTAAGGATTTGAGGAA
TGTATTTATAAAATCTGAAATGTGTTAATTAATACATGTAATGTGTGTGC
TCTCAGAGGGCGATGAAAACCTTCTGGCAACTGTGGGGCATGAAAGCCAT
TGGGGAGCCAGTCTGGACAAAGTGAGGTCAAGTCTTGTCTGAACCCAAAA
CAAATCTCTTGAGATCAGCAGGAATTAGGACTGTTCCCTCCTTCCTCTGG
GTCTGATTGTTCCCAGCAAGTATGCTGTATTATCCCCACCTCTGCCTCCT
CCCCTTTAGGTAGTTGTAGCCTGGTGGCCTAATTACGGCTTCCATTTCCT
TTCTCTATATAAAGACATGTTCAGCAAGCATCTGAAATATCTCTTCACGG
TAATGAACATTCCCAGTACCTAAGTACATGCCTCTCTTGTACCCTCACTC
CTTTTAACTATATTTTACTAAACCTTCATCTTTTCTACACTCACTTTACC
TTTCTTTAAATTTCCTTCCCAAATTTTTATAGTTCCTTATTACCCCTCCC
CACG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATAAAAACGAATACACAGAATACC
CAAATTTATGGGATACAATGGAGGCAGTACCAAGAGGGCACATTAATAGC
ACAAAGTGCCTACATTAAGTAAAAAACAACCCAAATTATCTCTTATTTGT
AACTTAACAGCATACCTGAATGCTCTAGAACTAAAAGAAGTCACACCTAA
GGAGTAAACAGCAAGAAATAATCAAATTCAGGGCTAAAATCAAAGTAGGA
TCAAGAACAAATTGCAAAGACTTTTTGGAACAATACTACTTACAAACTCT
AATCTCAACTAAAAGGCAGAGAAAGAATATAAAAATTATCAAAATTATAA
ATAAAAATGGAGACATAACAACAGACTTTGAGGAAATCTAGAGAAACAGA
GGACATCTTTTAAAAACCTATACTCCACAAAACGAGAAAATATAAAAGAA
ATGGGTAATTTTCTTAATTATTATCGAATTATTTACCAAAGTTAAACCAA
GATCAGATAATCATTTGAACAGACTTATAACCTCAAGTGAAATAAAAGCA
GTTTTTTAAAAAATTAATTTCATTCTTTACATACATTACATTCTGACTGC
TGTTTCCCTTACCTCCACTCTATCCAGTACCTCAGCCTCCCCTAGACCCA
TGCCTCCTCTGTTTTTCTTTAAAAAACAACNCCAAGCCCAAACCAAACTA
AACAAAACCAAACTAAG

Query= MSMg01no378_n13.b1 MSMg01no378_n13.b1 CHROMAT_FILE:
MSMg01no378_n13.b1 PHD_FILE: MSMg01no378_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:26 2005
         (408 letters)



>mm_chr1_12226424_12227239
          Length = 816

 Score =  679 bits (351), Expect = 0.0
 Identities = 390/407 (95%), Gaps = 11/407 (2%)
 Strand = Plus / Plus

                                                                       
Query: 12  tctcaaagctgccccataatgatacctctccagcaaatccacacctgctaaactgtccaa 71
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 tctcaaagctggtccataatgatacctctccagcaaatccacacctgctaaactgtccaa 270

                                                                       
Query: 72  acagcactaccaagtggggacttactc-aaggcctaaaactaggggtcatgtctcattca 130
           ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 271 acagcactaccaagtggggacttactcaaaggcctaaaactagggggcatgtctcattca 330

                                                                       
Query: 131 aactgccttaatctcatagtacgtaaagttggtaaacatgaacagaaaacctagttaggc 190
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 331 aactgccttaatctcatagtacataaagttggtaaacatgaacagaaaacctagttaggc 390

                                                                       
Query: 191 cctaaggatttgaggaatgtatttataaaatctgaaatgtgttaattaatacatgtaatg 250
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 391 cctaaggatttgaggaatgtatttataaaatctgaagtgtgttaattaatacatgtaatg 450

                                                                       
Query: 251 tgtgtgctctcagagggcgatgaaaaccttctggcaactgtggggcatgaaagccat--- 307
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   
Sbjct: 451 tgtgtgctctcagagggcgatgaaaaccatctggcaactgtggggcatgaaagccatgag 510

                                                                       
Query: 308 --tggggagccagtctggac-aaagtgaggtcaagtcttgtctgaacccaaaacaaatct 364
             |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 511 actggggagccagtctggaccaaa-tgaggtcaagtcttgtctgaacccaaaacaaatct 569

                                                          
Query: 365 ---cttgagatcagcaggaattaggactgttccctccttcctctggg 408
              ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tctcttgagatcagcaggaattaggactgttccctccttcctctggg 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 816
Length adjustment: 9
Effective length of query: 399
Effective length of database: 807
Effective search space:   321993
Effective search space used:   321993
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)