BAC Information

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BAC

Clone NameMSMg01-378O02
Chromosome1 (Build37)
Map Location 3,361,816 - 3,362,326
singlet/doubletsinglet
Overlap geneXkr4
Upstream genenone
Downstream geneLOC100038975, LOC664792, LOC619785, Rp1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378O02.T7 (MSMg01no378_o02.b1)MSMg01-378O02.TJ (MSMg01no378_o02.g1)
ACCAG483624AG483625
length7441,839
length of high quality
(start - end)
510 (79 - 588)---
definitionCHROMAT_FILE: MSMg01no378_o02.b1 PHD_FILE: MSMg01no378_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:28 2005CHROMAT_FILE: MSMg01no378_o02.g1 PHD_FILE: MSMg01no378_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCGATACGAGGGG
CGGAANTCNCATANTTCCCTTCCACATCCCTTGACTAAGATTGCTAAAAT
TATACTGGAGTTTTATCCTACAGTAAGGATTAGCATGAATTCTTGTTGAG
TGCACTTGTATGTTAAACTGTACTGTGCCTTGCAGTTGAGCCATTACATC
AGGAATCTCTTCCAAGAAGAAAAGACAAATAAGCACATATCATTTCCATG
TTAATCACAGAAATACCTCTATGTTCTTCTTATCTTCCTTGCCTGCTTTT
GCTACTTTAATTTCCATGGTCAATACTTAATGAGGTCAGTAGTTTACATG
CGGTAGTGTCCAGTCCAAGCACACTGTAATTTTTCAGTGTAATCCTTTGA
CCAGAGCTCTCTTGATTTTTATCTGTCTTGTTTTATGCATGAGAAAGAAA
AAATAGATATGCACATGTAGCAGTTACTACGGCAACTCCTGCGAAGGCAT
CTACCTGTCCATCATGGCAGAGGTACTTATGGTGTTTGTATTTTGCTTCA
CTCTCTGGATATATTCCTAGTAACTCCTGCCTCCCAGAATGACAAGCACA
AATTATGCCTTTGATGCTGTGTTATGCCTGCTGCCTTATGTGGATTGACA
TCTTTGCATAATCCCTGTTTCTCCCAATGTAAAAACGTCTGCTACTATTT
GTGGAAAAATTTGATGCCTTTAAATACCAGACTTTATACATTTC
TGTGTAGAATAGCGTGAACGAGTGTCGCGAATGTGTATCGGAGAGACGTG
ACTAGTCCNTATGACTCTCTCTCTCTCATAAACGAGTGGTGGTCNGNNCC
CCTCTGTTTTTTAACGCGCGTCTCCTCTCCTGCTAACAGCGCGTCGTCTG
CGTAAGATAACAAAACAAAAGCATGACGCCATAACACCGCACACACCATA
ATGACGCAATCACCTCCCTCTCAGCTATATGACCGGCGATATTTATATGA
GTGTGNAGAGTTNGTATCGCGNCGTGTGTGTCAAGNCACACACGTTCCGA
TATATAGCTGATTTATGTATATACCGTGTGTATATGAGTATCATATCATA
GACAGATTAACTATCATATAGCGACAACTATNTTTTCACATCAGTGTGAC
GATATATAGTGCACATATATGATTAATCTATCGATTGATCGGTACATATA
TCCTGCGTCGCGTAGTATATAATATCGAACGAGTTCGTTGTCAGATGTTG
NTTANACTTGATCTGTTGCCTCTGTTGCGATGGATGTGTGGGCTGAGTCT
GTATTAGCGGGTGAGAGCGTGTCTGATGCGAGCCGAGGAGTAGAGCAGGA
GCAGCGCGATGTGTGCTGTGGTGTGCGNGACCGCGTAGTATGTTGGCGCG
TGGTATATATCAGTTTATATTATCGCGCGCGCGACTCCCCGCGATATATA
TGATATGTATCTGTCGCGTGTGCATATACGTATGAGGATAGTGNTATAAT
GAGACGTGACCGCGCGCTCGACCGTCTGCGACGGTGCTATATGGCGAGTG
NTGAAGTGTNAGNGACTAAGTAGCGATGATGGTGATATATATACTCTACG
CCGGTGCGCGTGTATCGCGCGATCAGCGCGCTGATGATATGTATTATCAT
ATATGCCGCCGTTATCANTCTCTGATATTCATGTACTTCATCGAGAGTAT
GAACGCGAGTATGTGGAGTNAACGCGATATGTATGTAGATAAGAGCGCGC
TGTGATCTAGCCGCGCGCGCGCAGTGATTATGGTCATAGTATATCAACGT
CGCGGCGCGATCTCGGCGCGTGTGATGAGCTAGATCACATGATCCGCGTC
GACTGCTACGTGTGTTACTACTGTGTGATAATGCGTATGCATCGTACGCG
GCGCACGATGTGTGTGTGTANGTGCTCATAGTACACTGCCGCGTGTATCG
TCGTACTCGAGGTCGTCTGGACGCGTCGCTGCGAGCAGTATGAGTCATAA
TGATGATGATGACGAGCGAGGTGCGTGACTGTACGATGTGTGAGGCGTGT
AGGGCGTAGTGATATGACAACACGATGNGTGACGTATATGAGATATATCG
TTGGAGTATGAGCGCTCGTCTGATGTGCGTAATATTATAATGCGGCGAAC
AGACTAGACCCGCTGCTCATACGACGATATATACATGATGTGTTTNAGCG
CATNTACGCGNTAATGAGTGTATACGTNCNGCCGATCTATCGATGTATCG
CGCGGACAGCGATNCGAATTCGACCNAGCTATGAAGTAGAGACAGCGNCT
CGTGNCGCGTGATGGCNGCANTAATATATTTCTCGAGGCACGTCAGTGAG
TAGTCGGTTNAGTACGCAGACNCGTCGCGCAGTGCTACCAGCGTCATACG
TGACGTTGTGTACGNCTGTTGCTACGAGTACTAGTGNTGTGAGTNAGTAT
AGTAGTACGCTGCANGCTCCGCGAACCCGGATATACTGACTGGAGATNCN
GCGCTAACGTCCGGTGNCATATGATACGTCGTGGGCTGGGCNTGGTGTAN
GTNCNTCGCACNCACGTCCCGTCGTGTATCTACTATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_o02.b1 MSMg01no378_o02.b1 CHROMAT_FILE:
MSMg01no378_o02.b1 PHD_FILE: MSMg01no378_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:28 2005
         (510 letters)



>mm_chr1_3361616_3362526
          Length = 911

 Score =  957 bits (495), Expect = 0.0
 Identities = 507/511 (99%), Gaps = 1/511 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttgactaagattgctaaaattatactggagttttatcctacagtaaggattagcatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ccttgactaagattgctaaaattatactggagttttatcctacagtaaggattagcatga 652

                                                                       
Query: 61  attcttgttgagtgcacttgtatgttaaactgtactgtgccttgcagttgagccattaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 attcttgttgagtgcacttgtatgttaaactgtactgtgccttgcagttgagccattaca 592

                                                                       
Query: 121 tcaggaatctcttccaagaagaaaagacaaataagcacatatcatttccatgttaatcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 tcaggaatctcttccaagaagaaaagacaaataagcacatatcatttccatgttaatcac 532

                                                                       
Query: 181 agaaatacctctatgttcttcttatcttccttgcctgcttttgctactttaatttccatg 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 agaaatacctctatgttctccttatcttccttgcctgcttttgctactttaatttccatg 472

                                                                       
Query: 241 gtcaatacttaatgaggtcagtagtttacatgcggtagtgtccagtccaagcacactgta 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gtcaatacataatgaggtcagtagtttacatgcggtagtgtccagtccaagcacactgta 412

                                                                       
Query: 301 atttttcagtgtaatcctttgaccagagctctcttgatttttatctgtcttgttttatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 atttttcagtgtaatcctttgaccagagctctcttgatttttatctgtcttgttttatgc 352

                                                                       
Query: 361 atgagaaag-aaaaaatagatatgcacatgtagcagttactacggcaactcctgcgaagg 419
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 351 atgagaaagaaaaaaatagatatgcacatgtagcagttactacggcaactcctgcgaaag 292

                                                                       
Query: 420 catctacctgtccatcatggcagaggtacttatggtgtttgtattttgcttcactctctg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 catctacctgtccatcatggcagaggtacttatggtgtttgtattttgcttcactctctg 232

                                          
Query: 480 gatatattcctagtaactcctgcctcccaga 510
           |||||||||||||||||||||||||||||||
Sbjct: 231 gatatattcctagtaactcctgcctcccaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 911
Length adjustment: 10
Effective length of query: 500
Effective length of database: 901
Effective search space:   450500
Effective search space used:   450500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)