Query= MSMg01no378_o09.b1 MSMg01no378_o09.b1 CHROMAT_FILE:
MSMg01no378_o09.b1 PHD_FILE: MSMg01no378_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:30 2005
(483 letters)
>mm_chr1_45143911_45144792
Length = 882
Score = 503 bits (260), Expect = e-146
Identities = 449/558 (80%), Gaps = 77/558 (13%)
Strand = Plus / Plus
Query: 1 gtaacattcttactgaattcttagttcagggtcagtttcaaggagtatctagaatattgg 60
|||||||||||||||||||| ||||||||||| |||||| ||| ||||||||| |||||
Sbjct: 127 gtaacattcttactgaattccaagttcagggtcggtttcatggactatctagaacattgg 186
Query: 61 aacactggcaaaggcttagcgatatgtcaaaatcaatccttaaaggcacttataataaaa 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 187 aacactggcaaaggcttagctatatgtcaaaatcaatccttaaaggcacttataataaaa 246
Query: 121 caatactgaaagagagcatagggatccatacaccagactaacatgggaacaggttttgag 180
||||||||||||| |||| | ||| ||||||||||||||||||||| ||||| ||||||
Sbjct: 247 caatactgaaagaaagcacacagatgcatacaccagactaacatggggacaggctttgag 306
Query: 181 ggtacttgctatgggaatgccaaggttccagtaggctaagtttccatgaaactctttgcc 240
|||| ||||||||||||||| |||||||| || ||||||||||||||||||| ||||||
Sbjct: 307 tgtacctgctatgggaatgcccaggttccaatatgctaagtttccatgaaactttttgcc 366
Query: 241 tctgttctgtttccaggtttctaaacctgtcaagcagactttactggagtggatgtagca 300
|||| ||| |||||||||||||||||| |||||||||||| | |||| ||||||| |||
Sbjct: 367 tctggactgcttccaggtttctaaacctctcaagcagacttcattggaatggatgtggca 426
Query: 301 gtaaataaataaaataacca-aaaaaa--------------------------------- 326
||||| |||||||||||| | ||||||
Sbjct: 427 gtaaagaaataaaataacaagaaaaaagaaagaaagaaagaaagaaagaaagaaagaaag 486
Query: 327 ------------------------aaaag----gaaaa-aaaa-----------aaaacg 346
||||| ||||| |||| |||| |
Sbjct: 487 aaagaaagaaagaaagaaagaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaa-g 545
Query: 347 aaaagaaaagaaaaaaaa-gaaaatctgacaaagagcttcaagaaggacagtagaattca 405
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aaaagaaaagaaaaaaaaagaaaatctgacaaagagcttcaagaaggacagtagaattca 605
Query: 406 actgtaaatcaataccataaagatgagcaggaacctgaaagaaaattaaattcaagatct 465
||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 606 actgtaaatcaatactataaa-atgaccaggaacctgaaagaaaattaaattcaagatct 664
Query: 466 gtgactcatgcggcttgc 483
||||||||||||||||||
Sbjct: 665 gtgactcatgcggcttgc 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 882
Length adjustment: 10
Effective length of query: 473
Effective length of database: 872
Effective search space: 412456
Effective search space used: 412456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no378_o09.g1 MSMg01no378_o09.g1 CHROMAT_FILE:
MSMg01no378_o09.g1 PHD_FILE: MSMg01no378_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:30 2005
(411 letters)
>mm_chr1_45368530_45369341
Length = 812
Score = 758 bits (392), Expect = 0.0
Identities = 407/412 (98%), Gaps = 1/412 (0%)
Strand = Plus / Minus
Query: 1 tatttattttctagtatcttcttaagggttattcatttcagagacatttctagtgcattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tatttattttctagtatcttcttaagggttattcatttcagagacatttctagtgcattc 553
Query: 61 ttttggaaaacatggctaaatatcctatctttgtaaagagagcagtgtacaaaggagaac 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttttgaaaaacatggctaaatatcctatctttgtaaagagagcagtgtacaaaggagaac 493
Query: 121 atgaaattattacaagagaccaataaattccagatggcctgggagcatgccaagatgttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atgaaattattacaagagaccaataaattccagatggcctgggagcatgccaagatgttc 433
Query: 181 acaatgcaggaggggagtactttaaaacattttttaaaaggtgaacatgaaatcaagtta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 acaatgcaggaggggagtactttaaaacattttttaaaaggtgaacatgaaatcaagtta 373
Query: 241 atttaataacagtttttaccttaaacaactagagaatattatacatgtacattaacttt- 299
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atttaagaacagtttttaccttaaacaactagagaatattatacatgtacattaactttt 313
Query: 300 aaaaaaatcaaatatagaaaacaaaattaaggttagcaaaacattccacagtcagaggct 359
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 312 aaaaaaatcaaatatagaaaacaaaattaaggttaacaaaacattccacagtcagaggct 253
Query: 360 agacaggaaattcttatgaggctgattttcccactatcttaccctttgtaag 411
|||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 252 agacaggaaattcttaggaggctgattttcccactatcttaccctttgtaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 812
Length adjustment: 9
Effective length of query: 402
Effective length of database: 803
Effective search space: 322806
Effective search space used: 322806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
