Query= MSMg01no379_c04.b1 MSMg01no379_c04.b1 CHROMAT_FILE:
MSMg01no379_c04.b1 PHD_FILE: MSMg01no379_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:49 2005
(596 letters)
>mm_chr1_31624615_31625609
Length = 995
Score = 1085 bits (561), Expect = 0.0
Identities = 586/595 (98%), Gaps = 4/595 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaattcttttt-aaatgaggtactaaattaatgaaatttcactggtgaaaagta 62
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcaattctttttaaaatgaggtactaaattaatgaaatttcactggtgaaaagta 262
Query: 63 agatgtctattaatgaattaaatttcaaagcccccttggttcactagtcacaaggaccct 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agatgtctattaatgaattaaatttcaaagcccccttggttcactagtcacaaggaccct 322
Query: 123 gagcagcaaactatttttcactgatgattctctttgttgtgtttaatataaaacatttcg 182
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gagaagcaaactatttttcactgatgattctctttgttgtgtttaatataaaacatttcg 382
Query: 183 aatttacaatgcttattttcaaaacagtctattttttagattagaaactgaacagttcat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aatttacaatgcttattttcaaaacagtctattttttagattagaaactgaacagttcat 442
Query: 243 gtctaggtacataattactaaataattaaatttaataataatgaaatgaataatggtaat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtctaggtacataattactaaataattaaatttaataataatgaaatgaataatggtaat 502
Query: 303 ctatcatgccactatggtagctacacagtgaagtaggggtaagtgccaagt-aggaagtg 361
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 503 ctatcatgccactatggtagctacacagtgaagtaggggtaagtgccaagtcaggaagtg 562
Query: 362 aatccataaaaataagcacttatgagacccttaataaagttcgtgtctcaactcaagtga 421
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 563 aatccataaaaataagcacttatgagacccttaataaagttcctgtctcaactc--gtga 620
Query: 422 aaaagagttgacatcataaattccatgagtcctttaggactctatcctgtctaaatttta 481
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataagagttgacatcatcaattccatgagtcctttaggactctatcctgtctaaatttta 680
Query: 482 gatacttgtctaatgtaattcgatattaaatgttctatggaattttggagatggggaccc 541
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 gatacttgtctaatgtaattcgatattaaatattctatggaattttggagatggggaccc 740
Query: 542 tccagaatgtacctgagccctgggaggttagagacacttaggactcaatgggagg 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccagaatgtacctgagccctgggaggttagagacacttaggactcaatgggagg 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 995
Length adjustment: 10
Effective length of query: 586
Effective length of database: 985
Effective search space: 577210
Effective search space used: 577210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_c04.g1 MSMg01no379_c04.g1 CHROMAT_FILE:
MSMg01no379_c04.g1 PHD_FILE: MSMg01no379_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:49 2005
(493 letters)
>mm_chr1_31781411_31782303
Length = 893
Score = 803 bits (415), Expect = 0.0
Identities = 459/493 (93%), Gaps = 32/493 (6%)
Strand = Plus / Minus
Query: 1 tattgtaggtattctgtactttatggctaatatctacttatcactgagtaccttccattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tattgtaggtattctgtactttatggctaatatctacttatcactgagtaccttccattc 702
Query: 61 atggccaattaaaacaaagagaactctacaaagaattaacgaaagcaaaagttggttctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 atggccaattaaaacaaagagaactctacaaagaattaacgaaagcaaaagttggttctt 642
Query: 121 tgagaaaatcaacaagatagataaacccttagccaaactaactaaagggcaaatttggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tgagaaaatcaacaagatagataaacccttagccaaactaactaaagggcaaatttggag 582
Query: 181 agagaatccaaattaacatgtaacaaaattaaacagactcaaagacaataacatttactg 240
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 581 agagaatccaaattaacatgtaacaaaattaaacagactcgaagacaataagatttactg 522
Query: 241 aacttctgtacagttataaaagacattcacttcttcctcatcccctaatatttagccatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aacttctgtacagttataaaagacattcacttcttcctcatcccctaatatttagccatt 462
Query: 301 ctttctctcttttctacatcttaagctattcaaacatgtacattcatatatatatatatt 360
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 461 ctttctctcttttctacatcttaagctattcaaacatgtacattc----atatatatatt 406
Query: 361 catatatatgcatatataatatggtagatagatagatagatagatcgatcgatcgatcga 420
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 catatatatgcatatataatatggtagatagatagatagatagat--------------- 361
Query: 421 tcgatagatagatagatagatagatagaattggctagtttccttaatgagggataatatg 480
| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ------------t-gatagatagatagaattggctagtttccttaatgagggataatatg 314
Query: 481 aattatgtgcatt 493
|||||||||||||
Sbjct: 313 aattatgtgcatt 301
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
