BAC Information

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BAC

Clone NameMSMg01-379E11
Chromosome1 (Build37)
Map Location 188,074,509 - 188,215,249
singlet/doubletdoublet
Overlap genenone
Upstream geneIars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785, Lyplal1
Downstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17, Gpatch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379E11.T7 (MSMg01no379_e11.b1)MSMg01-379E11.TJ (MSMg01no379_e11.g1)
ACCAG483929AG483930
length743748
length of high quality
(start - end)		541 (65 - 605)524 (69 - 592)
definitionCHROMAT_FILE: MSMg01no379_e11.b1 PHD_FILE: MSMg01no379_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:00 2005CHROMAT_FILE: MSMg01no379_e11.g1 PHD_FILE: MSMg01no379_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(188,074,509 - 188,075,049)(188,214,732 - 188,215,249)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAATCCGCGGAATTCTC
AGCATTTCCCTTCGGTGAGATTTTTGGGCAGGCCAGGAGCTTTTTTCTCA
AGCTAATGTTAAAAGCAGGGCTAACAGGTCAAATGCAACGGAATTCAAAC
CCTTGGCCATACTCTCATCATTCAATAAATGACTTAAATAACTTATTTGA
TCAACAGGACCTTAGCTTCCTCTTTGCTAACATGAGAACAGAAATGCTAT
TTACTTCAAAGGTTGTTTGGGATTAAACTAATTAGGCTAGATAAGCTGTA
CCTGGACTCTATTATTATTACATAAAGTTAGCAACTACTGTTTCACCTTT
CCTCGAAGGATCCCCCCACCGTGTGTTCCCCCATGAGATAACTAATTATA
TATTATTAGGCATGGAGTTTATCTGGAAGGGCCCCTCCCTTAAAATCAGA
AGTCTGTGAAACTAAGGATTGAAACTGCAGAACTCTGCTGCCTGGCCAGA
AGTGTGGGAGCTGCATCTTTATCTCTGGCTCTGGGTGGGGGCAAGATATT
CTGAACTTCCCAAAATATCATATGATTATTGTGTAGCTGTAGTTTTTCTG
GTAAAGATCGGGGGAATTACACTGTTCTCTCCCTAGGAGTCGAGTTTGAG
GGGAATGGTCATTACCTGGATGCAAAACCCAGCTCAGGGAAGCCATGTGG
TCTAGAGACTTTAAAACTAGTATAAAACCTGCCTGCCCTACAA

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACCGTCAGACCTGGTGCAGATCCAGAGATGGG
TCTACAGGGCTCACTGACACCTCAGATTCAGGATTTGGCTCCATGCTCTG
GGACTCCAAGAGCCATATACCTCCTTTAGAATCTGTTTGGACCCAGATGA
CCAAACCCTTTGGCTTCTGCTTTCAGGGAAGGGAGTTTGTAGTTCTGCAT
TGCACTTATTAGCAGAAAGGTTAAATCTGTTCAGACAATGTAGAGAAATC
TAAGCAAAGTCATCATTGGGGAAGTGCTACAAAGTCACTAAACATCCTTG
GTAGGTTTGTGAAGCTAGTCAGGTTCCTGACCCTCTCTGCCATCCACCTC
CCTCGATCTGCCTTCTTTCCCTGAGGAAGTGTGTGAAAAGTGTTAAGAGC
CAATAAAACATTCTGTCTTACTTTGTAAAGTGCCAGACATTGATTCTGTT
CAGAACACCGTAGGTGGTGACTTCTTGTTCCACTCTCTTTGCCAGTCACT
CTGATGGAAAACACTGGGGAAGAGAAGGACTGGGGATGATGAAGGAAGTA
TGGAAGGGGGGTATTTCTGCCTGACGCATTCTATTTCTTGTGTCACATTA
CTTCCGGTTGGCAGCTTTCCTGGTTATTGGATAAAAGAAATCTTTTTGAC
ACCCATAACCACATTTCCTTCGGTTTTTTCTCCCTTTCCTTTTTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_e11.b1 MSMg01no379_e11.b1 CHROMAT_FILE:
MSMg01no379_e11.b1 PHD_FILE: MSMg01no379_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:00 2005
         (541 letters)



>mm_chr1_188074309_188075249
          Length = 941

 Score =  969 bits (501), Expect = 0.0
 Identities = 531/541 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgagatttttgggcaggccaggagcttttttctcaagctaatgttaaaagcagggctaa 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgagatttctgggcaggccaggagcttttttctcaagctaatgttaaaagcagggctaa 260

                                                                       
Query: 61  caggtcaaatgcaacggaattcaaacccttggccatactctcatcattcaataaatgact 120
           | |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 cgggtcaaatgcaatggaattcaaacctttggccatactctcatcattcaataaatgact 320

                                                                       
Query: 121 taaataacttatttgatcaacaggaccttagcttcctctttgctaacatgagaacagaaa 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 taaataacttatttgatcaacaggacctcagcttcctctttgctaacatgagaacagaaa 380

                                                                       
Query: 181 tgctatttacttcaaaggttgtttgggattaaactaattaggctagataagctgtacctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctatttacttcaaaggttgtttgggattaaactaattaggctagataagctgtacctg 440

                                                                       
Query: 241 gactctattattattacataaagttagcaactactgtttcacctttcctcgaaggatccc 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactctattaagattacataaagttagcaactactgtttcacctttcctcgaaggatccc 500

                                                                       
Query: 301 cccaccgtgtgttcccccatgagataactaattatatattattaggcatggagtttatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccaccgtgtgttcccccatgagataactaattatatattattaggcatggagtttatct 560

                                                                       
Query: 361 ggaagggcccctcccttaaaatcagaagtctgtgaaactaaggattgaaactgcagaact 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 ggaagggcccctcccttaaaatcagaagtctgtgaaactaaggattgaaactgcaggact 620

                                                                       
Query: 421 ctgctgcctggccagaagtgtgggagctgcatctttatctctggctctgggtgggggcaa 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 ctgctgcctggccagaagtgtgggagctgcatctttatctctggctctgggtggggacaa 680

                                                                       
Query: 481 gatattctgaacttcccaaaatatcatatgattattgtgtagctgtagtttttctggtaa 540
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacattctgaacttcccaaaatatcatatgattattgtgtagctgtagtttttctggtaa 740

            
Query: 541 a 541
           |
Sbjct: 741 a 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no379_e11.g1 MSMg01no379_e11.g1 CHROMAT_FILE:
MSMg01no379_e11.g1 PHD_FILE: MSMg01no379_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:00 2005
         (524 letters)



>mm_chr1_188214526_188215449
          Length = 924

 Score =  932 bits (482), Expect = 0.0
 Identities = 509/518 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   agacctggtgcagatccagagatgggtctacagggctcactgacacctcagattcaggat 66
           ||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 724 agacctggtacagatccagaggtgggtctgcagggctcactgacacctcagattcaggat 665

                                                                       
Query: 67  ttggctccatgctctgggactccaagagccatatacctcctttagaatctgtttggaccc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ttggctccatgctctgggactccaagagccatatacctcctttagaatctgtttggaccc 605

                                                                       
Query: 127 agatgaccaaaccctttggcttctgctttcagggaagggagtttgtagttctgcattgca 186
           ||||| |||||||||||||||||||||||||||||||||||| || | ||||||||||||
Sbjct: 604 agatggccaaaccctttggcttctgctttcagggaagggagtctgcaattctgcattgca 545

                                                                       
Query: 187 cttattagcagaaaggttaaatctgttcagacaatgtagagaaatctaagcaaagtcatc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cttattagcagaaaggttaaatctgttcagacaatgtagagaaatctaagcaaagtcatc 485

                                                                       
Query: 247 attggggaagtgctacaaagtcactaaacatccttggtaggtttgtgaagctagtcaggt 306
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aatggggaagtgctacaaagtcactaaacatccttggtaggtttgtgaagctagtcaggt 425

                                                                       
Query: 307 tcctgaccctctctgccatccacctccctcgatctgccttctttccctgaggaagtgtgt 366
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 424 tcctgaccctctctgccatccacctccctcgatctgccttctctccctgaggaagtgtgt 365

                                                                       
Query: 367 gaaaagtgttaagagccaataaaacattctgtcttactttgtaaagtgccagacattgat 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gaaaagtgttaagagccaataaaacattctgtcttactttgtaaagtgccagacattgat 305

                                                                       
Query: 427 tctgttcagaacaccgtaggtggtgacttcttgttccactctctttgccagtcactctga 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tctgttcagaacaccgtaggtggtgacttcttgttccactctctttgccagtcactctga 245

                                                 
Query: 487 tggaaaacactggggaagagaaggactggggatgatga 524
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tggaaaacactggggaagagaaggactggggatgatga 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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