Query= MSMg01no379_f22.b1 MSMg01no379_f22.b1 CHROMAT_FILE:
MSMg01no379_f22.b1 PHD_FILE: MSMg01no379_f22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:07 2005
(420 letters)
>mm_chr1_73847019_73847839
Length = 821
Score = 690 bits (357), Expect = 0.0
Identities = 412/459 (89%), Gaps = 44/459 (9%)
Strand = Plus / Minus
Query: 5 gaattccaagggcttgcgggagcttgtccagtggtagaaacaggcagtttcccagtgacc 64
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gaattccaagggcaggggggagcttgtccagtggtagaaacaggcagtttcccagtgacc 672
Query: 65 ttccagagaggtcattttctatcagaagtccacagcagtcac------------------ 106
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ttccagagaggtcattttctatcagaagtccacagcagtcaccaggtctcacacaggtct 612
Query: 107 --------------------------caggtctcacacaggtctcacacaggtctcacac 140
||||||||||||||||||||||||||||||||||
Sbjct: 611 cacacaggtctcacacaggtctcacacaggtctcacacaggtctcacacaggtctcacac 552
Query: 141 aggtctcacacaggtctcacacaggtctcacacagggcagagtatggatttaggatttct 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aggtctcacacaggtctcacacaggtctcacacagggcagagtatggatttaggatttct 492
Query: 201 tagcatcagagattacaaagggcatggagtttagaccaagatacctgggacactttctgg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tagcatcagagattacaaagggcatggagtttagaccaagatacctgggacactttctgg 432
Query: 261 aaccaagactagtacactaaactttgctccagggtaactagggtgtggagctgctgctca 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aaccaagactagtacactaaactttgctccagggtaactagggtgtggagctgctgctca 372
Query: 321 aggtctgagtgctttgggtcagtttttcttcttccatcagtgtctctccattttgtcaga 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aggtctgagtgctttgggtcagtttttcttcttccatcagtgtctctccattttgtcaga 312
Query: 381 tgctcgctcccctacttccctccctccctccctccctcc 419
|||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgctcgctcccctacttccctccctccctccctccctcc 273
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 821
Length adjustment: 9
Effective length of query: 411
Effective length of database: 812
Effective search space: 333732
Effective search space used: 333732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_f22.g1 MSMg01no379_f22.g1 CHROMAT_FILE:
MSMg01no379_f22.g1 PHD_FILE: MSMg01no379_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:07 2005
(452 letters)
>mm_chr1_73701378_73702229
Length = 852
Score = 874 bits (452), Expect = 0.0
Identities = 452/452 (100%)
Strand = Plus / Plus
Query: 1 atggatcagctcatggtaatagccttcttggccacgatattgactatgtggcaagcaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggatcagctcatggtaatagccttcttggccacgatattgactatgtggcaagcaatg 260
Query: 61 ctggttcccatggaaaggacttttggttgaatcaattacttaatctattcatgatatatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggttcccatggaaaggacttttggttgaatcaattacttaatctattcatgatatatg 320
Query: 121 ctgcttctctgttctaccaatgctgaaaacatttaaatgtaagtatgttcatatgtggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcttctctgttctaccaatgctgaaaacatttaaatgtaagtatgttcatatgtggaa 380
Query: 181 acatacatgtgttttacagacccaagtgatgccttaatgggtcactcaacagcctgtaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatacatgtgttttacagacccaagtgatgccttaatgggtcactcaacagcctgtaat 440
Query: 241 aacccatcccatacaagccaaagcaaaccaagaaattcagaggcacagcttacacaacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacccatcccatacaagccaaagcaaaccaagaaattcagaggcacagcttacacaacag 500
Query: 301 ctgaaactgacgggccataaaggtcacaaaaaattatttgatttaacttgaaatacagca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgaaactgacgggccataaaggtcacaaaaaattatttgatttaacttgaaatacagca 560
Query: 361 aactgtctggaaaaggtccaaagaacataaactattcaggtgaatggctctataattctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactgtctggaaaaggtccaaagaacataaactattcaggtgaatggctctataattctg 620
Query: 421 ttccaccatttccggtcccacaagttacctaa 452
||||||||||||||||||||||||||||||||
Sbjct: 621 ttccaccatttccggtcccacaagttacctaa 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
