Query= MSMg01no379_i10.b1 MSMg01no379_i10.b1 CHROMAT_FILE:
MSMg01no379_i10.b1 PHD_FILE: MSMg01no379_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:19 2005
(302 letters)
>mm_chr1_127389808_127390509
Length = 702
Score = 538 bits (278), Expect = e-157
Identities = 296/302 (98%)
Strand = Plus / Plus
Query: 1 aaggtagcttgcatttcaccttttatttacagttttttttctccaaaaatgtatattcaa 60
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 aaggtagcttgcacttcaccttttatttacaggtttttttctccaaaaatgtatattcaa 260
Query: 61 catctattcataatttttcatattttctcagagaaatctgcccatccctgagaagaaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catctattcataatttttcatattttctcagagaaatctgcccatccctgagaagaaggc 320
Query: 121 tcagttggtaaagggcttggcttggaagcgcgaagacctgagttcaatcgctagaactca 180
||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||
Sbjct: 321 tcagttggtaaagggcttggcttagaagcacaaagacctgagttcaatcgctagaactca 380
Query: 181 attcacataaaataaagccaagcatggtggcacacatttagaatcccagcactggaaagg 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 attcacataaaataaagccaagcatggtgggacacatttagaatcccagcactggaaagg 440
Query: 241 tagaggcaagagaatccctgggatgcactagccagacagcctagctaaattgccaatgct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagaggcaagagaatccctgggatgcactagccagacagcctagctaaattgccaatgct 500
Query: 301 ta 302
||
Sbjct: 501 ta 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space: 203049
Effective search space used: 203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_i10.g1 MSMg01no379_i10.g1 CHROMAT_FILE:
MSMg01no379_i10.g1 PHD_FILE: MSMg01no379_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:19 2005
(522 letters)
>mm_chr1_127561820_127562742
Length = 923
Score = 862 bits (446), Expect = 0.0
Identities = 479/492 (97%), Gaps = 5/492 (1%)
Strand = Plus / Minus
Query: 1 attccagattcatgagaaaaataatgtactaatgctttgaggaaacaaatattggggtat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 attccagattcatgagaaaaataatgtactaatgctttgaggaaacaaatattggggtat 431
Query: 61 gtttttatgtagccctgataactgatcccaacactgcactccaacaagaggggtttcttg 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gtttttatgtatccctgataactgatcccaacactgcactccaacaagaggggtttcttg 371
Query: 121 ctgaagcccagctctcttgtatattgcatccagaaggaatggtgtcatgaaataccttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctgaagcccagctctcttgtatattgcatccagaaggaatggtgtcatgaaataccttgt 311
Query: 181 gttccccatgtattcactttccactcattcaacaaacacgtgtaaaacacccaagtgtag 240
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gttctccatgtattcactttgcactcattcaacaaacacgtgtaaaacacccaagtgtag 251
Query: 241 gactattac---tattcttctcctctgtcccctggaatcttgccatctagagcagctgtt 297
||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gactattacaaaga--catctcctctgtcccctggaatcttgccatctagagcagctgtt 193
Query: 298 cgcaacctgtatgcgacaactccttttgcgagactaaatgacccttttacaggggtcacc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 cgcaacctgtatgcgacaactccttttgcgagactaaatgacccttttacaggggtcacc 133
Query: 358 taagaccatcttgcatatcagatatttacattatgattcataacagtagcaaaattacag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 taagaccatcttgcatatcagatatttacattatgattcataacagtagcaaaattacag 73
Query: 418 ctatgaggtagcaatgaaaataattttatgggtgggcatcaccacaacatgaggaacgta 477
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 72 ctatgatgtagcaatgaaaataattttatggttgggcatcaccacaacatgaggaacgtg 13
Query: 478 ttaaaaggttgc 489
||||||||||||
Sbjct: 12 ttaaaaggttgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 923
Length adjustment: 10
Effective length of query: 512
Effective length of database: 913
Effective search space: 467456
Effective search space used: 467456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
