XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TAAATCTTCACAAAGATGAATAAAAAATGATATCCCTCCAGTATAGTGTG
TATAAGCACTGTCCTTGGTCACTACTGCCATTTACTGTTTAACATCAAAA
AAACAAAAGTTATTTAAAAATCATGCTACTGGATTTCTATCCCTCCACTA
TGACCAGCTCTACACTGATCGGCAATGTTTTACAAGTTTATATCATCAGA
TTGAAGCAGGTTTAAGGTGTGAAACAGCTGTATTAGACACAAAGTTACAA
GATATAGTCAAGTTCGTATCGAATATAGGTGTTCTTATCGTCATTGTAGA
TTCGTGGGTAATGTGCTATGAGAGCATCCTGGGAGCCAATGTAGATGGAG
TTGTAAATTTTCCAATATACGTCTCTGACTTTCCGAGCTGGGTGGAACAG
ACCCTAGAATAAATAAAAGGTAGAGTTACTTCTATCTTCAAGGGGAAAAT
AAATAAATAAACTTTAATACACTATTAGCTATAAATATGATGCATGGTGG
CACACACATTTAAATCCTAGCACTTAGAAACAGAAGCAAGTAGATCTATC
TACTTCAATGCTGGCCTGNTCTACATAGTAAGTTCCAGGCCAGCCAAGGC
TCAAAAATAAAATAAACAAGTACTTACTTTGAAGAAGGAAGGAAAAAAGT
CTGGAAACTGAGTAACAAATTGTGGGGGTAAACCACAAATCTAACCTA

CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGTAATTCCNGGCTAGGCAGGGCTACAGTGTGAAACC
CTGTTTCAATTCCCTTCCCACCAGGAGGAGGAGGAGGAGTAGGTATATTA
TTAGTAATATTATAGAGGTTTTTTTTTTTTTTTGTTTTTTTTTTTTGGGN
GNGTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTCCTTTTTTTGTTTTTC
TTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTTCTTTT
CTTTTTTCCTTTTTTCTTTTCTTCCCCTCCTCCTCTTTCCCCCCTCTTTT
CCTCTTTCCTCCCTCTCCCTTCCCCTTTTCCCTCCCTTCCCTTCCCTTTT
TCTTTTTCTTCTCTTCTTCCACACCCCCCTTTTTCTTTCCTTTCTTCTCT
CTTCCTCTCTTTCCCCCCTCCTCCCCCTTTCTCTCTCCTTTTCCCCTCTC
CTCTTTCCCCTCCCTCTCTTTTTCCCCCCCCCCTCCTCTCTTTCCCCCCC
TCCCCTCTTTTCTCTCTCTCCTCCTCTTTTCTTCTTCTTCCCTCCTTTCC
CCTCTCCCTTCTCTTTTTTCTCTTTTCCTCCTCTTTCCCTTCCTCTTTTT
CCTTTTTTCCCTTTTCCCCCTCTCTCCCTCTTTCTTTTCTTCCCTCTTTT
TCTTTTCTCTCCTTTTTTTTTCCCCTTCCCCTCCTCTTTCCCCCCCCCCT
TTTTTTTTTTTCTCCTCTCTCTTCCCTTCCCCCCCCCTTCCCCTTTTCTT
TTCCTCCCCTTTTTCTTTCCCCCTCTCTCCCCCTTCN

Query= MSMg01no379_j03.b1 MSMg01no379_j03.b1 CHROMAT_FILE:
MSMg01no379_j03.b1 PHD_FILE: MSMg01no379_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:22 2005
         (580 letters)



>mm_chr1_55043724_55044707
          Length = 984

 Score = 1075 bits (556), Expect = 0.0
 Identities = 571/578 (98%), Gaps = 4/578 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaatcttcacaaagatgaataaaaaatgatatccctccagtatagtgtgtata 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaatcttcataaagatgaataaaaaatgatatccctccagtatagtgtgtata 264

                                                                       
Query: 65  agcactgtccttggtcactactgccatttactgtttaacatcaaaaaaacaaaagttatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcactgtccttggtcactactgccatttactgtttaacatcaaaaaaacaaaagttatt 324

                                                                       
Query: 125 taaaaatcatgctactggatttctatccctccactatgaccagctctacactgatcggca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaaaatcatgctactggatttctatccctccactatgaccagctctacactgatcggca 384

                                                                       
Query: 185 atgttttacaagtttatatcatcagattgaagcaggtttaaggtgtgaaacagctgtatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgttttacaagtttatatcatcagattgaagcaggtttaaggtgtgaaacagctgtatt 444

                                                                       
Query: 245 agacacaaagttacaagatatagtcaagttcgtatcgaatataggtgttcttatcgtcat 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 agacacaaagttacaagatatagtcaagttcgtaacgaatataggtgttcttatcgtcat 504

                                                                       
Query: 305 tgtagattcgtgggtaatgtgctatgagagcatcctgggagccaatgtagatggagttgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgtagattcgtgggtaatgtgctatgagagcatcctgggagccaatgtagatggagttgt 564

                                                                       
Query: 365 aaattttccaatatacgtctctgactttccgagctgggtggaacagaccctagaataaat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaattttccaatatacgtctctgactttccgagctgggtggaacagaccctagaataaat 624

                                                                       
Query: 425 aaaaggtagagttacttctatcttcaaggggaaaataaataaataaac----tttaatac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||
Sbjct: 625 aaaaggtagagttacttctatcttcaaggggaaaataaataaataaacaaactttaatac 684

                                                                       
Query: 481 actattagctataaatatgatgcatggtggcacacacatttaaatcctagcacttagaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 actattagctataaatatgatgcatggtggcacacacatttaaatcctagcacttagaaa 744

                                                 
Query: 541 cagaagcaagtagatctatctacttcaatgctggcctg 578
           ||||||||||| ||||||||||||||||||||||||||
Sbjct: 745 cagaagcaagtggatctatctacttcaatgctggcctg 782


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 984
Length adjustment: 10
Effective length of query: 570
Effective length of database: 974
Effective search space:   555180
Effective search space used:   555180
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)