BAC Information

Click to search

BAC

Clone NameMSMg01-379L16
Chromosome1 (Build37)
Map Location 156,000,830 - 156,001,225
singlet/doubletsinglet
Overlap genenone
Upstream geneLamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneCacna1e, LOC671336, Ier5, Mr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379L16.T7 (MSMg01no379_l16.b1)MSMg01-379L16.TJ (MSMg01no379_l16.g1)
ACCAG484272AG484273
length774820
length of high quality
(start - end)
406 (49 - 454)267 (71 - 337)
definitionCHROMAT_FILE: MSMg01no379_l16.b1 PHD_FILE: MSMg01no379_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:34 2005CHROMAT_FILE: MSMg01no379_l16.g1 PHD_FILE: MSMg01no379_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCXXXXXXXXXXXXXXXXXXXTT
CATTTTCCAAGTGTATGCTTATGCAACCATTTTTCTTCTCCCTTCTGACC
TTTGAAACTGATATTCGTTGAAAAAGCTATTTTTCACTAAATTGATCTAG
ACACTCATTGACTAGCCCGTTGAGCGTGGTTGCCTCTCTGAAAGGGCCTC
AGCTCCCGAGCTAATGGTAGCCACGATTCCTACATTTTTGCCGTATACTT
GGAACTGTACAAGGTGCTTCCTCACTGGAAGTCAATGAAGAAGGTGCTAT
TAGCATTTCTATTTTATAGATGGGGGAAAAAAATGGCCTTACCAAAGTGA
CAGCTTAGGATATCAGAACTAGGCTCCAGATGAGTTAATGACTCTAAAAT
CTCTATTCTGAGCCATTTCATGCCACTATCATAATAAAATATTTCTGAGG
TACAGCTGACAAGAGTTCCTTTGCAGTGAACCGTTCGGATTTTAGATCAG
AAAATATTTAATATTTTCTTCTTGCAGGAGATACCCACGAAAGTATACCG
TCCTAATTGTTCCCTACGTGACTAGTTACCCCTTCATAGGTTTTCCTACC
TGCCAGTGGTATCCTGTAATCCATAAATTCCTGTTAAAATTTCGATGTCT
CTTTTTTGTTTTTTTCACCCTTTGCCCTCTATTTATAATGTTTTAAAGCT
TCTTTGTTTTTTTTTTCCCCCATCTCCCTCTTTCCTACACCACCGTTCTT
TATTTCCCTTCACCTCTTTGCCCG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTTTGTATTTGCCGACCGTGAACTTTTCA
TCTTCCAGCCTCAGCCTTCTGAGTAGCTAGCTACTGCAGGCCTTTACCAC
TGGGGCTGGCTTTGATTAAATTTTTCTTTCATTTCTTTTTGTTGGGGAGG
GGAGCATGTCAGAGCCTCATGATTAGCTTGGTCTGGTCTTGAACTCTAAG
TAGCCAAGGATTATTTTGAATTCCTGCCTCCACTTACAACATACTGAAGT
TACAGATGTGTACTACCAATTTGGACACACACACACACTCACACACACAC
TCACACACACATATACATGTTGTACGATGCCGTTTTTTGTCTATTCATCA
AACCTTCCCCCTCCCCCCTCCACACAATACCTATCCTTCCTCTTCTTTCC
TATATCCATCCCCCCTCCCCTTTACCTATTTCTCCTTTTACCCCCACCCC
CTTTTTCTTCCCACCTCCTCACCCCTAAACTTCCCTTCCACCCCCCCTTT
TCCCACTCACTTACTTCTTTATCTCGTTTTCGTTCCACCCACTCAAATAC
CTTATCCGCCAACTAGTTTTTCACACTCCCCCTCGCCCTACCGCCCAATA
ATAAAAATACTTATTTTCCTGTTGTCCATCTCGTCCATTTTACCTCCCCC
CTGTCCCTTATCCTTAATAATCTCACCTCTCTCATCCCCCCATTTATTTC
TCTCATCTCCCTCTCGACGTTCATATGATTTTTAACCCTCCCTCGTCCCG
TCTGATACAATATATCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_l16.b1 MSMg01no379_l16.b1 CHROMAT_FILE:
MSMg01no379_l16.b1 PHD_FILE: MSMg01no379_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:34 2005
         (406 letters)



>mm_chr1_156000806_156001611
          Length = 806

 Score =  766 bits (396), Expect = 0.0
 Identities = 396/396 (100%)
 Strand = Plus / Minus

                                                                       
Query: 11  aagtgtatgcttatgcaaccatttttcttctcccttctgacctttgaaactgatattcgt 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aagtgtatgcttatgcaaccatttttcttctcccttctgacctttgaaactgatattcgt 361

                                                                       
Query: 71  tgaaaaagctatttttcactaaattgatctagacactcattgactagcccgttgagcgtg 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgaaaaagctatttttcactaaattgatctagacactcattgactagcccgttgagcgtg 301

                                                                       
Query: 131 gttgcctctctgaaagggcctcagctcccgagctaatggtagccacgattcctacatttt 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gttgcctctctgaaagggcctcagctcccgagctaatggtagccacgattcctacatttt 241

                                                                       
Query: 191 tgccgtatacttggaactgtacaaggtgcttcctcactggaagtcaatgaagaaggtgct 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tgccgtatacttggaactgtacaaggtgcttcctcactggaagtcaatgaagaaggtgct 181

                                                                       
Query: 251 attagcatttctattttatagatgggggaaaaaaatggccttaccaaagtgacagcttag 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 attagcatttctattttatagatgggggaaaaaaatggccttaccaaagtgacagcttag 121

                                                                       
Query: 311 gatatcagaactaggctccagatgagttaatgactctaaaatctctattctgagccattt 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gatatcagaactaggctccagatgagttaatgactctaaaatctctattctgagccattt 61

                                               
Query: 371 catgccactatcataataaaatatttctgaggtaca 406
           ||||||||||||||||||||||||||||||||||||
Sbjct: 60  catgccactatcataataaaatatttctgaggtaca 25


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)