Query= MSMg01no379_o13.b1 MSMg01no379_o13.b1 CHROMAT_FILE:
MSMg01no379_o13.b1 PHD_FILE: MSMg01no379_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:47 2005
(535 letters)
>mm_chr1_188437199_188438133
Length = 935
Score = 853 bits (441), Expect = 0.0
Identities = 501/541 (92%), Gaps = 32/541 (5%)
Strand = Plus / Minus
Query: 1 ccacatttatccctctgaaaggctatgttatatgtgacaacattccaattttgaggcacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ccacatttatccctctgaaaggctatgttatatgtgacaacattccaattttgaggcacg 542
Query: 61 acttgtgccaatccacacaggcaattagagctgacacattccatgggctatgggtcaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 acttgtgccaatccacacaggcaattagagctgacacattccatgggctatgggtcaagt 482
Query: 121 gctgaaagaaacccacaaaggaaaactttaccaaaggaatccaccgaaggcatgattagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gctgaaagaaacccacaaaggaaaactttaccaaaggaatccaccgaaggcatgattagg 422
Query: 181 ggttcagagtgctgggatcctctactgtcttagttgttccttttgcctatcccctatccc 240
||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 421 ggttcggagtgctgggctcctctactgtcttagttgttccttttgcctatcctctatccc 362
Query: 241 atgattgttgtcttgttggatgctgtggactacatctcagtgtgattgatagtagtgggg 300
|||| || || ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgagtggtggcttgttgaatgctgtggactacatctcagtgtgattgatagtagtgggg 302
Query: 301 caatatggccatggtccatcgaagctgcacctgcagagcatggagatgctgaagaagaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caatatggccatggtccatcgaagctgcacctgcagagcatggagatgctgaagaagaag 242
Query: 361 gaatcagttaaacatgttacgtcatggccggaaaaggtggctcccacctgctgccaggga 420
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaatcagttaaacatgttacgtcatggccggaaaaggtggc------------------- 201
Query: 421 aggtggcacacatccaccatcctagtatgtgggagat------aggacagtcttaaattt 474
|||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 200 -------acacatccaccatcctagtatgtgggagattgagataggacagtcttaaattt 148
Query: 475 gttaatttttaaagatattcaaatttaaaagcaaatcatattttgcttggacagcctgaa 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 147 gttaatttttaaagatattcaaatttaaaagcaaatcatattttgcttggacagcttgaa 88
Query: 535 g 535
|
Sbjct: 87 g 87
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_o13.g1 MSMg01no379_o13.g1 CHROMAT_FILE:
MSMg01no379_o13.g1 PHD_FILE: MSMg01no379_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:48 2005
(203 letters)
>mm_chr1_188271655_188272257
Length = 603
Score = 393 bits (203), Expect = e-114
Identities = 203/203 (100%)
Strand = Plus / Plus
Query: 1 agcacagaaatggtcggaagtcagtagtgatcacttgtcctgctctgtctggtggggatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcacagaaatggtcggaagtcagtagtgatcacttgtcctgctctgtctggtggggatg 260
Query: 61 gcagggagccgtggctttctttaaatggatttggctggattgcatcaagagatcaaagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagggagccgtggctttctttaaatggatttggctggattgcatcaagagatcaaagcc 320
Query: 121 atgaagaaaagcaagggaggaaagaaagggggagaagcaaaggaagggaagggaaggaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaagaaaagcaagggaggaaagaaagggggagaagcaaaggaagggaagggaaggaag 380
Query: 181 gggaggggaggagaagggaaaag 203
|||||||||||||||||||||||
Sbjct: 381 gggaggggaggagaagggaaaag 403
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space: 116025
Effective search space used: 116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
