BAC Information

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BAC

Clone NameMSMg01-379O14
Chromosome1 (Build37)
Map Location 81,913,291 - 82,103,294
singlet/doubletdoublet
Overlap genenone
Upstream gene9430031J16Rik, EG621020, LOC433328, EG665145
Downstream geneIrs1, Rhbdd1, Col4a4, Col4a3, 5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379O14.T7 (MSMg01no379_o14.b1)MSMg01-379O14.TJ (MSMg01no379_o14.g1)
ACCAG484411AG484412
length715718
length of high quality
(start - end)
281 (324 - 604)338 (78 - 415)
definitionCHROMAT_FILE: MSMg01no379_o14.b1 PHD_FILE: MSMg01no379_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:48 2005CHROMAT_FILE: MSMg01no379_o14.g1 PHD_FILE: MSMg01no379_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,913,291 - 81,913,571)(82,102,957 - 82,103,294)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCG
GAATTCCCACGTTTCTTTTCCTTAAAACCTGATGACCTTGCCCTGTTCAC
ATATCAGGCTATTCACTGTCTATCATTCGTGTTTAAATGTGCATTTTTCT
TTCCTGGCAGAGACTATGCTTTTCAACTTCTTGTTTCCAACATGTTTATC
CCATCATGTGAGCCCATGCCCATTAGATGCCATTCTCACTCTTCACAAAC
ACTGCCCTCCCCCACTTTCAGACTGCTTTCTTCAAACATGGGCTGTGTTT
CAACTTTTTAATCACAATTTTGTCATGTTAAGATTCCTTGTAATGATTAA
CAGCCAAGTTGGAACAGAATTTATTGGGAAAGAGCATAAACCCCAAGTTA
CATATTGATATAACAGCAAAAGAATTACATAAAGAATTCACTAGTCACTA
TATTAGCCACTAAACCAGCTCTCCTTGTGGGAGCTGCTCAGTGTCAAGGT
CAAAGTTGAGCCATTGGAGGCACTCTGCTTTTGATAATCCACAGTTATCT
CCCTGCCGCTATGCTATGCAGAAGCTAACAGTAACAGCAACAGCCCCTTC
CTTCACATGGATAACATTAAATGAGAGCCACTTTGAAGCTCCCATGATAT
AATTATTTGGTGAGGTCAAACCGGCTTTATACTCAGAGAATCCCAACCCT
TTCCTGAGAGATGCG
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAAGAGTTCCAGTAAAGATC
TTTATTTTGAAGGAGATTTTTCCTTATATATTTTGAAAAACACTTTCTTA
CAAATTTTTATGTATGTATTTTACTTTAAGTACTTGCATGTGCTATGCAG
GCTCTGCACCCAATGCAGTGAAGTTGGAAGGAAGGAATGTGTAAGAATTG
AAGCTAATTGTGCAGTGCTAGAGAAAACAAGAGAATCATCTCAGAAAACA
GGATTTTAAGCTGAGAGCTTTTGATTGAGGCATCTGAAGTACAGCAGATA
TTATGCTAGTTACTACAATCTTTAAAAAAATAGAACTGTAGTCATTTCAC
TTCTTTCATTTCAAAAGGAGATAACATTTAAAATATAGAACATATATACA
AGTGACTAAGCATTGCTCTATTTAGAGATTGCCAAAAATTGAGGACAGAT
AAAATTTATCTTTACTCAGTACGATATTGTAAGACACTATATTTGAAATC
AATCACTTGAGCTAATTAAACATATATATACGCACTTACATACATATGTA
TATATATATGCACACCATTCGCGCTCCCCCTTTTTACCCCTCCCCTTATT
TTTTCATTTTACCCCCAATCCCTACACCACTTGTCCAACCCCGACCTTTT
ACCATCTTTGCCCCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_o14.b1 MSMg01no379_o14.b1 CHROMAT_FILE:
MSMg01no379_o14.b1 PHD_FILE: MSMg01no379_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:48 2005
         (281 letters)



>mm_chr1_81913091_81913771
          Length = 681

 Score =  536 bits (277), Expect = e-157
 Identities = 280/281 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgttaagattccttgtaatgattaacagccaagttggaacagaatttattgggaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgttaagattccttgtaatgattaacagccaagttggaacagaatttattgggaaaga 260

                                                                       
Query: 61  gcataaaccccaagttacatattgatataacagcaaaagaattacataaagaattcacta 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcataaacctcaagttacatattgatataacagcaaaagaattacataaagaattcacta 320

                                                                       
Query: 121 gtcactatattagccactaaaccagctctccttgtgggagctgctcagtgtcaaggtcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcactatattagccactaaaccagctctccttgtgggagctgctcagtgtcaaggtcaa 380

                                                                       
Query: 181 agttgagccattggaggcactctgcttttgataatccacagttatctccctgccgctatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttgagccattggaggcactctgcttttgataatccacagttatctccctgccgctatg 440

                                                    
Query: 241 ctatgcagaagctaacagtaacagcaacagccccttccttc 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatgcagaagctaacagtaacagcaacagccccttccttc 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no379_o14.g1 MSMg01no379_o14.g1 CHROMAT_FILE:
MSMg01no379_o14.g1 PHD_FILE: MSMg01no379_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:48 2005
         (338 letters)



>mm_chr1_82102757_82103494
          Length = 738

 Score =  638 bits (330), Expect = 0.0
 Identities = 336/338 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaaagagttccagtaaagatctttattttgaaggagatttttccttatatattttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tctaaagagttccagtaaagatctttattttgaaggagatttttccttatatattttgaa 479

                                                                       
Query: 61  aaacactttcttacaaatttttatgtatgtattttactttaagtacttgcatgtgctatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aaacactttcttacaaatttttatgtatgtattttactttaagtacttgcatgtgctatg 419

                                                                       
Query: 121 caggctctgcacccaatgcagtgaagttggaaggaaggaatgtgtaagaattgaagctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 caggctctgcacccaatgcagtgaagttggaaggaaggaatgtgtaagaattgaagctaa 359

                                                                       
Query: 181 ttgtgcagtgctagagaaaacaagagaatcatctcagaaaacaggattttaagctgagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttgtgcagtgctagagaaaacaagagaatcatctcagaaaacaggattttaagctgagag 299

                                                                       
Query: 241 cttttgattgaggcatctgaagtacagcagatattatgctagttactacaatctttaaaa 300
           |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 298 cttttgattgaggcatctgaagtagagcagatattatgctagttactagaatctttaaaa 239

                                                 
Query: 301 aaatagaactgtagtcatttcacttctttcatttcaaa 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aaatagaactgtagtcatttcacttctttcatttcaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)