BAC Information

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BAC

Clone NameMSMg01-379P18
Chromosome1 (Build37)
Map Location 74,610,304 - 74,610,774
singlet/doubletsinglet
Overlap genePlcd4
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1
Downstream geneZfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379P18.T7 (MSMg01no379_p18.b1)MSMg01-379P18.TJ (MSMg01no379_p18.g1)
ACCAG484467AG484468
length764780
length of high quality
(start - end)
488 (27 - 514)73 (345 - 417)
definitionCHROMAT_FILE: MSMg01no379_p18.b1 PHD_FILE: MSMg01no379_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:54 2005CHROMAT_FILE: MSMg01no379_p18.g1 PHD_FILE: MSMg01no379_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTC
TACCATTACTGGTAGCATACACCTTTAATCCCAGGCCAGAACTATATAGT
GAGACTGTCTAAAATAAATCCTAAGAGGGAAGATAACCTGACTCAATTGC
AGACTTTGAAGCCAACTGACGCGTTTCAAATCACTTTCTAGTTGTGCAAC
ATTGGACAAGTTCCTTAACTTGTAACCTCAGTAAACTCATCAGTATGATA
GGGTAATTCTCTATAACCTGCTTCAAAGGGTTGTAAGGACTAGCCATTAA
AAAGTATTTACAGCCGGGCGTGGTGGCGCATGCCTTTAATCCCAGCACTT
GGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCATCCTGGTCTACA
AAGTGAGTTCCAGGACAGCCAGGGCTACGCAGAGAAACCCTGTCTCGAAA
AACTGAAAAAAAAAATTATTTACAATTCCTGGTGCACAGCAAGAACTATA
GAAAATTGTAATTGGTGTGCCTACTTTCCAGCCTTTAAAATTTTAGGTTG
GAAACTAGAATACCCTGTCTATGCAAGATTTTGCAAACTGCGAAGGTCTA
GCGCAAGTCCTGTCTTCTCACACGCGTGTACTCTGGTTGAAGTAACGCCT
CATTTTACTAACACTCCCGTTCCTTTCGTCCTGGGTTTTTAGCAATCTAT
GATTCTTTTTTCCCCCTATGGCTTTAAACACACACCCCATTTTTTTGCGA
TCCTTTGTTTACAA
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTACAAGGTCTCTGGGACCTAGGAGAACAGAG
AGAGGAAAGGCCAACCCTCCAAAGAGATGGAGGGAAGAAAGGAAAAGAAA
AAAAAAGAAAGAGAGGGAGACACTTATTTCCTCTCCTCTAGGAATACCAG
ACAGCTTTATTCAACTTCCACGGCCTGCCTAATATCCCAAGAGTGTATCC
ACCCAGTCACCTTATCACACCTGCCTCACAGGTCCAGCTCCAACTCCACG
GAGATTCCCTCTGAGCCACTGTCTCTCACATCAGAGATCACCTGCCTCGC
CCTGCTCATCTCTATCCTCTCAAGCCTCCAGTCACACCAAGGAGAGAAAT
AACCTGCCTGGAGGAATCTTGAATTAGGGGACAGGGGTTGAGTCTGACCC
AGGGGCTGCTTCCTACCATGGTTAGATTGGGAGGATGTCAGGGAACATAG
GCTTTTAAGTTCACCTTCAGCGGATTATCCGGACAGGCTCAGCCCCATGA
ATCTCTACCGCTCTTCTTGTTTTATACTGTATCCCTTGCAGACCTTCCCC
CCTATTGGCTCTATAATCCCAAGTTCTGCCCTTTGTCTTCTACCCAATTT
AATCCCCATCTCGCTACTTCCTTTACTCTCACATCGACTCTTCACTCTAT
ATCATTTCCTCAATCACCCACCCTCTCCCCTTTTCACATATCCACCTGCC
TGACACCCTTGTTACCCTTTACATCGCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_p18.b1 MSMg01no379_p18.b1 CHROMAT_FILE:
MSMg01no379_p18.b1 PHD_FILE: MSMg01no379_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:54 2005
         (488 letters)



>mm_chr1_74610088_74610975
          Length = 888

 Score =  843 bits (436), Expect = 0.0
 Identities = 463/472 (98%), Gaps = 1/472 (0%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattctctaccattactggtagcatacacctttaatcccaggccagaactatatagtga 76
           |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 gaattctctaccaggagtggtagcatacacctttaatcccaggccagaactatatagtga 276

                                                                       
Query: 77  gactgtctaaaataaatcctaagagggaagataacctgactcaattgcagactttgaagc 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gactgtctaaaataaatcctaagagggaagataacctgactcaattgcagactttgaagc 336

                                                                       
Query: 137 caactgacgcgtttcaaatcactttctagttgtgcaacattggacaagttccttaacttg 196
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 caactgacgagtttcaaatcactttctagttgtgcaacattggacaagttccttaacttg 396

                                                                       
Query: 197 taacctcagtaaactcatcagtatgatagggtaattctctataacctgcttcaaagggtt 256
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 397 taacctcagtaaactcatcagtatgatagggtaattctctataacctgcctcaaagggtt 456

                                                                       
Query: 257 gtaaggactagccattaaaaagtatttacagccgggcgtggtggcgcatgcctttaatcc 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gtaaggactagccattaaaaagtatttacagccgggcgtggtggcgcatgcctttaatcc 516

                                                                       
Query: 317 cagcacttgggaggcagaggcaggcggatttctgagtttgaggccatcctggtctacaaa 376
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 517 cagcacttgggaggcagaggcaggcggatttctgagttcgaggccatcctggtctacaaa 576

                                                                       
Query: 377 gtgagttccaggacagccagggctacgcagagaaaccctgtctcgaaaaactgaaaaaaa 436
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 577 gtgagttccaggacagccagggctacacagagaaaccctgtctcgaaaaactgaaaaaaa 636

                                                               
Query: 437 aaattatttacaattcctggtgcacagcaagaactatagaaaattgtaattg 488
           || |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 637 aa-ttatttacaattcctggtgcacagtaagaactatagaaaattgtaattg 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)