BAC Information

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BAC

Clone NameMSMg01-380C11
Chromosome1 (Build37)
Map Location 171,117,729 - 171,118,046
singlet/doubletsinglet
Overlap genenone
Upstream genePbx1
Downstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380C11.T7 (MSMg01no380_c11.b1)MSMg01-380C11.TJ (MSMg01no380_c11.g1)
ACCAG484597AG484598
length741764
length of high quality
(start - end)
526 (64 - 589)318 (70 - 387)
definitionCHROMAT_FILE: MSMg01no380_c11.b1 PHD_FILE: MSMg01no380_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:08 2005CHROMAT_FILE: MSMg01no380_c11.g1 PHD_FILE: MSMg01no380_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGAATTC
TCACCTTACCATACCGAATGGNAGAGAAACACCTGAAAAAATGTTCAACA
TCCGTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCT
CACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCT
GGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGTGAGTGC
AGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATT
GGACATAGTACTTTTTTAGGATCCAGCAATACCTCTCCTGGGCATATATC
CAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATA
GCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTC
AACCGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACT
ACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATG
GACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACCAAGAAACTC
ACACAATATGTACTCACTGATAAGTGGATATTAGCCCCCAACCTAGGATA
CCCAAGATATAAGATATAATTTGCTAATTACCTGGAACTCCACGAACCTT
GATCACTGAAGTGTGTTCTCTATGCTCTTTCCTAGATTTGG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACTCCATTTTGAAGCCAGCTGCATGGACTT
TGTAGTCCTATAATCACATCTTCCCAGACAGCCACGCCAACAATTGTGCT
GAGCAGCCCCTGAGCCATGATTACCCTGCAATGATTATTTGTGGGTTTGT
TATTCATTTCCTAAAACTGGCTCTTCTTGGCATCTCCCCACCCCATGTTG
TTCTGTGTGAGCTGCAGCTGCAGGGCCAGAGCTCACATCTCCCCTGGATG
GGTATTCATTGTGATTATATTAGGGAAGAAAATTCTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTAATCCAGTGGGCAAT
TACAATATCATGTCACAATAAGATTTGTTGTGAGGCAGATAAAATGTCTT
GCTTAAACGCTACATTTGATCAATGCCGTTCCTATATTATCTATGGTCAT
ACCCGATTTGCAACTGCGTATTTCCTGCCTTTTCCTCCGTTTCGCAATTC
TATCCCCTCTATCCTTTTAATTTCTTTTGTCTACAATTCCCACCCCCTTC
CTCTGCGCTGCTTCCACCCTCTACCCCCTTTACCCTTTTCCTCCTTCAAT
GACTCATTTGGCACCTCCTCTGTATTTCTTCTACTCCCCCCCTCTTTGTT
TCCCCCCTTGCTATGTCCTCGCATCTGTTATCCCTCCTTTTTTTTCTCCC
CCTTTTACCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_c11.g1 MSMg01no380_c11.g1 CHROMAT_FILE:
MSMg01no380_c11.g1 PHD_FILE: MSMg01no380_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:08 2005
         (318 letters)



>mm_chr1_171117581_171118298
          Length = 718

 Score =  615 bits (318), Expect = e-180
 Identities = 318/318 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactccattttgaagccagctgcatggactttgtagtcctataatcacatcttcccagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 cactccattttgaagccagctgcatggactttgtagtcctataatcacatcttcccagac 407

                                                                       
Query: 61  agccacgccaacaattgtgctgagcagcccctgagccatgattaccctgcaatgattatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 agccacgccaacaattgtgctgagcagcccctgagccatgattaccctgcaatgattatt 347

                                                                       
Query: 121 tgtgggtttgttattcatttcctaaaactggctcttcttggcatctccccaccccatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tgtgggtttgttattcatttcctaaaactggctcttcttggcatctccccaccccatgtt 287

                                                                       
Query: 181 gttctgtgtgagctgcagctgcagggccagagctcacatctcccctggatgggtattcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gttctgtgtgagctgcagctgcagggccagagctcacatctcccctggatgggtattcat 227

                                                                       
Query: 241 tgtgattatattagggaagaaaattctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tgtgattatattagggaagaaaattctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 167

                             
Query: 301 tgtgtgtgtgtgttctaa 318
           ||||||||||||||||||
Sbjct: 166 tgtgtgtgtgtgttctaa 149


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)